Os03g0116900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0116900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.23 | 0.429 | 7.17 | -1.2 | 0.464 | 1.09 | -0.431 | -3.34 | -0.609 | 9.02 | 24.74 | 1338 | -- | -- |
| 88.42 | 0.438 | 7.06 | -0.316 | 0.522 | 0.84 | -0.255 | -- | -0.435 | 8.94 | 23.1 | 1264 | -- | -- |
| 83.86 | 0.427 | 7.16 | -1.2 | 0.462 | 1.08 | -- | -3.24 | -0.604 | 8.96 | 24.74 | 1351 | -- | -- |
| 88.41 | 0.438 | 7.06 | -0.277 | 0.534 | 0.748 | -- | -- | -0.379 | 8.98 | 25 | 1274 | -- | -- |
| 95.66 | 0.456 | 7.18 | -1.21 | -- | 1.05 | -- | -3.12 | -0.619 | -- | 24.36 | 1408 | -- | -- |
| 109.58 | 0.491 | 7.03 | -0.0392 | 0.445 | -- | -0.393 | -- | -0.272 | 8.15 | -- | -- | -- | -- |
| 110.05 | 0.491 | 7.03 | -0.0509 | 0.446 | -- | -- | -- | -0.272 | 8.1 | -- | -- | -- | -- |
| 99.54 | 0.465 | 7.06 | -0.306 | -- | 0.715 | -- | -- | -0.364 | -- | 24.95 | 1415 | -- | -- |
| 90.28 | 0.443 | 7.03 | -- | 0.485 | 0.699 | -- | -- | -0.317 | 9.04 | 25.18 | 1309 | -- | -- |
| 120.98 | 0.514 | 7.04 | -0.047 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 110.12 | 0.491 | 7.03 | -- | 0.446 | -- | -- | -- | -0.267 | 8.1 | -- | -- | -- | -- |
| 101.7 | 0.47 | 7.05 | -- | -- | 0.641 | -- | -- | -0.309 | -- | 25.3 | 1412 | -- | -- |
| 121.03 | 0.514 | 7.04 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 82.83 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 10 | 82.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 14 | 82.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 16 | 82.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 43 | 82.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 195 | 83.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 212 | 83.59 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 239 | 83.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 293 | 84.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 332 | 84.76 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 335 | 84.82 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 339 | 84.87 | temperature | 30 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 375 | 84.98 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 398 | 85.02 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 416 | 85.05 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 419 | 85.07 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 420 | 85.07 | temperature | 30 | 43200 | > th | dose dependent | sin | 5 | NA |
| 446 | 85.13 | temperature | 30 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 480 | 85.16 | temperature | 30 | 43200 | > th | dose independent | sin | 5 | NA |
| 483 | 85.16 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 485 | 85.17 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 486 | 85.17 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 508 | 85.21 | temperature | 30 | 43200 | < th | dose independent | sin | 6 | NA |
| 644 | 85.26 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 739 | 85.27 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 742 | 85.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 813 | 85.34 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 816 | 85.34 | temperature | 30 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 817 | 85.35 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 882 | 85.35 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 20 |