BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0114900 Os03g0114900|AK103851
         (194 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0114900  Similar to putaive mitochondrial inner membran...   308   2e-84
Os10g0519700  Mitochondrial import inner membrane translocas...   224   2e-59
Os04g0566700  Mitochondrial import inner membrane translocas...    80   9e-16
Os03g0676750                                                       73   1e-13

>Os03g0114900 Similar to putaive mitochondrial inner membrane protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 194

 Score =  308 bits (789), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 156/194 (80%)

Query: 1   MADPRLFSSGSGTRDDRTDASGRRLYNPYQDLNIPYKQLYDLPTSPEFLFQEESLAQRRS 60
           MADPRLFSSGSGTRDDRTDASGRRLYNPYQDLNIPYKQLYDLPTSPEFLFQEESLAQRRS
Sbjct: 1   MADPRLFSSGSGTRDDRTDASGRRLYNPYQDLNIPYKQLYDLPTSPEFLFQEESLAQRRS 60

Query: 61  WGENLTYYTGIGYLSXXXXXXXXXXXXXXXNAEPGDTAKIRANRVLNSCGSNGRRMGNTL 120
           WGENLTYYTGIGYLS               NAEPGDTAKIRANRVLNSCGSNGRRMGNTL
Sbjct: 61  WGENLTYYTGIGYLSGAVAGAAVGLRDAARNAEPGDTAKIRANRVLNSCGSNGRRMGNTL 120

Query: 121 GVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSXXXXXXXXXXXXXXX 180
           GVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRS               
Sbjct: 121 GVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSAAVAGAIGGVLAGAA 180

Query: 181 XXXXXXXXRYVPAL 194
                   RYVPAL
Sbjct: 181 MAGKQAAKRYVPAL 194



>Os10g0519700 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 195

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 136/196 (69%), Gaps = 3/196 (1%)

Query: 1   MADPRLFSSGSGTRDDRTDASGRRLYNPYQDLNIPY--KQLYDLPTSPEFLFQEESLAQR 58
           MADPRLF SGS +  D +   GRR YNPY DL+ PY  + LYDLPTSPEFLFQEES AQR
Sbjct: 1   MADPRLFPSGSNSSGDAS-GPGRRKYNPYHDLSTPYSYQTLYDLPTSPEFLFQEESAAQR 59

Query: 59  RSWGENLTYYTGIGYLSXXXXXXXXXXXXXXXNAEPGDTAKIRANRVLNSCGSNGRRMGN 118
           RSWGENLTYYTG+GYLS                AEPGDTAKIRANRVLNSCG  GRR+GN
Sbjct: 60  RSWGENLTYYTGVGYLSGAVAGAALGLRDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGN 119

Query: 119 TLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSXXXXXXXXXXXXX 178
            LGVIGL+YAG+ES MVA RDRDDW+NSV AGLGTGALFRAANGPRS             
Sbjct: 120 RLGVIGLMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSAAVAGAIGGVLAG 179

Query: 179 XXXXXXXXXXRYVPAL 194
                     RYVPA+
Sbjct: 180 AAMAGKQLAKRYVPAI 195



>Os04g0566700 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 98

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 52/92 (56%)

Query: 103 NRVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANG 162
           +RVLN CGS GR  GN LGV+ LL+ GIES +  +RD D W N+V AG+GTGAL+RAA G
Sbjct: 5   SRVLNQCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGIGTGALYRAAAG 64

Query: 163 PRSXXXXXXXXXXXXXXXXXXXXXXXRYVPAL 194
           PR+                       RY P L
Sbjct: 65  PRAAIVGSSVGGLMAGAVVVGRQALTRYAPNL 96



>Os03g0676750 
          Length = 97

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 39/66 (59%)

Query: 129 GIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSXXXXXXXXXXXXXXXXXXXXXXX 188
           GIESGMV VRDRDDWINSVT GL TGALFRAA+G RS                       
Sbjct: 32  GIESGMVTVRDRDDWINSVTVGLSTGALFRAADGSRSAAITSAIGGVLTGAAMSGKQAAK 91

Query: 189 RYVPAL 194
           RYVPAL
Sbjct: 92  RYVPAL 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,635,176
Number of extensions: 207658
Number of successful extensions: 347
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)