Os10g0519700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial import inner membrane translocase, subunit Tim17/22 family protein.
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Os10g0519700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial import inner membrane translocase, subunit Tim17/22 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.15 | 0.258 | 11.7 | -0.509 | 0.239 | -0.548 | -0.857 | -0.115 | -0.0357 | 11.5 | 37.41 | 10 | -- | -- |
| 30.14 | 0.256 | 11.7 | -0.505 | 0.234 | -0.547 | -0.785 | -- | -0.0317 | 11.5 | 37.45 | 8 | -- | -- |
| 31.01 | 0.259 | 11.7 | -0.51 | 0.205 | -0.541 | -- | 0.602 | -0.0369 | 10.7 | 30 | 8 | -- | -- |
| 32.57 | 0.266 | 11.7 | -0.537 | 0.268 | -0.541 | -- | -- | -0.0371 | 10.9 | 40 | 8 | -- | -- |
| 31.95 | 0.263 | 11.7 | -0.494 | -- | -0.666 | -- | 0.6 | -0.0391 | -- | 27.34 | 9 | -- | -- |
| 35.75 | 0.28 | 11.7 | -0.492 | 0.665 | -- | -0.704 | -- | -0.0295 | 11.7 | -- | -- | -- | -- |
| 37.9 | 0.288 | 11.7 | -0.521 | 0.668 | -- | -- | -- | -0.0328 | 11.6 | -- | -- | -- | -- |
| 33.66 | 0.27 | 11.7 | -0.545 | -- | -0.691 | -- | -- | -0.0418 | -- | 29.58 | 9 | -- | -- |
| 40.04 | 0.295 | 11.7 | -- | 0.339 | -0.615 | -- | -- | 0.027 | 11.2 | 70.06 | 7 | -- | -- |
| 65.94 | 0.379 | 11.7 | -0.54 | -- | -- | -- | -- | -0.0406 | -- | -- | -- | -- | -- |
| 45.05 | 0.314 | 11.7 | -- | 0.674 | -- | -- | -- | 0.0253 | 11.7 | -- | -- | -- | -- |
| 41.52 | 0.3 | 11.7 | -- | -- | -0.684 | -- | -- | 0.0242 | -- | 29.02 | 7 | -- | -- |
| 73.63 | 0.401 | 11.7 | -- | -- | -- | -- | -- | 0.0193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 28.48 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 5 | 28.62 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 8 | 28.68 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 15 | 28.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 33 | 29.21 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 35 | 29.29 | radiation | 20 | 10 | < th | dose independent | rect. | 24 | 22 |
| 37 | 29.29 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 44 | 29.37 | radiation | 40 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 45 | 29.37 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 46 | 29.38 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 70 | 29.58 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 71 | 29.58 | radiation | 30 | 10 | < th | dose independent | rect. | 3 | 17 |
| 100 | 29.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 101 | 29.72 | radiation | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 105 | 29.73 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 115 | 29.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 116 | 29.78 | radiation | 30 | 10 | < th | dose independent | rect. | 1 | 10 |
| 127 | 29.81 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 129 | 29.82 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 10 |
| 153 | 29.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 154 | 29.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 167 | 29.92 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 169 | 29.92 | radiation | 30 | 10 | < th | dose independent | rect. | 16 | 19 |
| 177 | 29.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 180 | 29.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 185 | 29.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 196 | 29.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 198 | 29.99 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 217 | 30.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 261 | 30.06 | radiation | 20 | 30 | < th | dose independent | rect. | 14 | 21 |
| 292 | 30.11 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 23 |
| 302 | 30.12 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 332 | 30.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 354 | 30.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 369 | 30.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 372 | 30.19 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 398 | 30.21 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 17 |
| 412 | 30.22 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 413 | 30.22 | radiation | 30 | 90 | < th | dose independent | rect. | 12 | 9 |
| 463 | 30.26 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 16 | NA |
| 472 | 30.26 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 478 | 30.27 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 526 | 30.31 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 527 | 30.31 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 534 | 30.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 554 | 30.32 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 561 | 30.32 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 580 | 30.34 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 20 |
| 619 | 30.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 626 | 30.37 | radiation | 30 | 270 | < th | dose independent | rect. | 12 | 6 |
| 646 | 30.38 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 713 | 30.44 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 723 | 30.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 751 | 30.46 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 24 | 19 |
| 759 | 30.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 761 | 30.47 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 777 | 30.49 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 7 |
| 791 | 30.50 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 6 |
| 797 | 30.50 | temperature | 20 | 30 | > th | dose dependent | sin | 4 | NA |
| 826 | 30.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 859 | 30.52 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 867 | 30.53 | wind | 1 | 270 | > th | dose independent | rect. | 12 | 7 |
| 883 | 30.54 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 887 | 30.54 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 895 | 30.55 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 909 | 30.55 | radiation | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 926 | 30.56 | radiation | 1 | 10 | > th | dose dependent | sin | 2 | NA |
| 942 | 30.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 983 | 30.59 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 4 |
| 990 | 30.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 998 | 30.59 | radiation | 20 | 10 | > th | dose independent | rect. | 11 | 23 |