BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0519700 Os10g0519700|AK107812
         (195 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0519700  Mitochondrial import inner membrane translocas...   269   8e-73
Os03g0114900  Similar to putaive mitochondrial inner membran...   210   5e-55
Os03g0676750                                                       74   6e-14

>Os10g0519700 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 195

 Score =  269 bits (688), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 138/195 (70%), Positives = 138/195 (70%)

Query: 1   MADPRLFPSGSNSSGDASGPGRRKYNPYHDLSTPYSYQTLYDLPTSPEFLFQEESAAQRR 60
           MADPRLFPSGSNSSGDASGPGRRKYNPYHDLSTPYSYQTLYDLPTSPEFLFQEESAAQRR
Sbjct: 1   MADPRLFPSGSNSSGDASGPGRRKYNPYHDLSTPYSYQTLYDLPTSPEFLFQEESAAQRR 60

Query: 61  SWGENLTYYTXXXXXXXXXXXXXXXXXXXXXXXEPGDTAKIRANRVLNSCXXXXXXXXXX 120
           SWGENLTYYT                       EPGDTAKIRANRVLNSC          
Sbjct: 61  SWGENLTYYTGVGYLSGAVAGAALGLRDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNR 120

Query: 121 XXXXXXMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSXXXXXXXXXXXXXX 180
                 MYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRS              
Sbjct: 121 LGVIGLMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSAAVAGAIGGVLAGA 180

Query: 181 XXXXKQLAKRYVPAI 195
               KQLAKRYVPAI
Sbjct: 181 AMAGKQLAKRYVPAI 195



>Os03g0114900 Similar to putaive mitochondrial inner membrane protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 194

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 1   MADPRLFPSGSNSSGDAS-GPGRRKYNPYHDLSTPYSYQTLYDLPTSPEFLFQEESAAQR 59
           MADPRLF SGS +  D +   GRR YNPY DL+ PY  + LYDLPTSPEFLFQEES AQR
Sbjct: 1   MADPRLFSSGSGTRDDRTDASGRRLYNPYQDLNIPY--KQLYDLPTSPEFLFQEESLAQR 58

Query: 60  RSWGENLTYYTXXXXXXXXXXXXXXXXXXXXXXXEPGDTAKIRANRVLNSCXXXXXXXXX 119
           RSWGENLTYYT                       EPGDTAKIRANRVLNSC         
Sbjct: 59  RSWGENLTYYTGIGYLSGAVAGAAVGLRDAARNAEPGDTAKIRANRVLNSCGSNGRRMGN 118

Query: 120 XXXXXXXMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSXXXXXXXXXXXXX 179
                  +YAG+ES MVA RDRDDW+NSV AGLGTGALFRAANGPRS             
Sbjct: 119 TLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGPRSAAVAGAIGGVLAG 178

Query: 180 XXXXXKQLAKRYVPAI 195
                KQ AKRYVPA+
Sbjct: 179 AAMAGKQAAKRYVPAL 194



>Os03g0676750 
          Length = 97

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 40/66 (60%)

Query: 130 GMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSXXXXXXXXXXXXXXXXXXKQLAK 189
           G+ES MV  RDRDDW+NSV  GL TGALFRAA+G RS                  KQ AK
Sbjct: 32  GIESGMVTVRDRDDWINSVTVGLSTGALFRAADGSRSAAITSAIGGVLTGAAMSGKQAAK 91

Query: 190 RYVPAI 195
           RYVPA+
Sbjct: 92  RYVPAL 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,903,103
Number of extensions: 156396
Number of successful extensions: 309
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 3
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)