BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0106200 Os03g0106200|AK120128
(879 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0106200 Conserved hypothetical protein 1794 0.0
Os10g0550000 Conserved hypothetical protein 696 0.0
Os04g0559200 Conserved hypothetical protein 215 1e-55
>Os03g0106200 Conserved hypothetical protein
Length = 879
Score = 1794 bits (4647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 867/879 (98%), Positives = 867/879 (98%)
Query: 1 MGKRSQRLARRQENIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKKSR 60
MGKRSQRLARRQENIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKKSR
Sbjct: 1 MGKRSQRLARRQENIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKKSR 60
Query: 61 DFEETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCLEK 120
DFEETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCLEK
Sbjct: 61 DFEETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCLEK 120
Query: 121 SSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYHDD 180
SSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYHDD
Sbjct: 121 SSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYHDD 180
Query: 181 CKNKSELCPELKSHIHTKLSELKSVPCQRAYEESPDWGQREHFYEKYICNSRSYQSNKLV 240
CKNKSELCPELKSHIHTKLSELKSVPCQRAYEESPDWGQREHFYEKYICNSRSYQSNKLV
Sbjct: 181 CKNKSELCPELKSHIHTKLSELKSVPCQRAYEESPDWGQREHFYEKYICNSRSYQSNKLV 240
Query: 241 DAPDMLSPEKELFLKTLQKPSPHTLEKEXXXXXXXXXXXXKLEPRKILEKGENTKNSKQH 300
DAPDMLSPEKELFLKTLQKPSPHTLEKE KLEPRKILEKGENTKNSKQH
Sbjct: 241 DAPDMLSPEKELFLKTLQKPSPHTLEKENTQNNQNRQVVTKLEPRKILEKGENTKNSKQH 300
Query: 301 EVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNKIVILKPNPRGIDTTVATASTC 360
EVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNKIVILKPNPRGIDTTVATASTC
Sbjct: 301 EVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNKIVILKPNPRGIDTTVATASTC 360
Query: 361 LDQQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDTRRGRPSVYEDDLQRDSQRINDSV 420
LDQQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDTRRGRPSVYEDDLQRDSQRINDSV
Sbjct: 361 LDQQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDTRRGRPSVYEDDLQRDSQRINDSV 420
Query: 421 FKVRKDSKQSDKDNLRPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILEY 480
FKVRKDSKQSDKDNLRPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILEY
Sbjct: 421 FKVRKDSKQSDKDNLRPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILEY 480
Query: 481 NSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPRLKGRIDLSPEEINISAIQQDERTEY 540
NSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPRLKGRIDLSPEEINISAIQQDERTEY
Sbjct: 481 NSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPRLKGRIDLSPEEINISAIQQDERTEY 540
Query: 541 AKERDLSDEDSGSVACGNSEVLDGKADQDRHSMKQETAQDGDIMHIEEIDKPACSETICS 600
AKERDLSDEDSGSVACGNSEVLDGKADQDRHSMKQETAQDGDIMHIEEIDKPACSETICS
Sbjct: 541 AKERDLSDEDSGSVACGNSEVLDGKADQDRHSMKQETAQDGDIMHIEEIDKPACSETICS 600
Query: 601 EGITLKEQCTCTSSLELIEGAEPGREHAGMLLSYPENVVESLEHQEPKTPRSSASLELIS 660
EGITLKEQCTCTSSLELIEGAEPGREHAGMLLSYPENVVESLEHQEPKTPRSSASLELIS
Sbjct: 601 EGITLKEQCTCTSSLELIEGAEPGREHAGMLLSYPENVVESLEHQEPKTPRSSASLELIS 660
Query: 661 QISPEGNHEKQEQPSPVSVLDPFFCEDVDSPDHETMIKCEMHQDMMRPHIPDAISDQWVF 720
QISPEGNHEKQEQPSPVSVLDPFFCEDVDSPDHETMIKCEMHQDMMRPHIPDAISDQWVF
Sbjct: 661 QISPEGNHEKQEQPSPVSVLDPFFCEDVDSPDHETMIKCEMHQDMMRPHIPDAISDQWVF 720
Query: 721 WEDEDARLSYIKAMLELSELCTYQNLEVWYLEDELISPCMIEELHQGNQTDDLKLPFDCI 780
WEDEDARLSYIKAMLELSELCTYQNLEVWYLEDELISPCMIEELHQGNQTDDLKLPFDCI
Sbjct: 721 WEDEDARLSYIKAMLELSELCTYQNLEVWYLEDELISPCMIEELHQGNQTDDLKLPFDCI 780
Query: 781 CEAITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQLVNI 840
CEAITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQLVNI
Sbjct: 781 CEAITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQLVNI 840
Query: 841 DLEDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
DLEDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI
Sbjct: 841 DLEDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
>Os10g0550000 Conserved hypothetical protein
Length = 901
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/910 (46%), Positives = 560/910 (61%), Gaps = 40/910 (4%)
Query: 1 MGKRSQRLARRQE--NIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKK 58
MG+RS + + QE N+GC+WGL+ MLYFRRDAKFLLD KQ SRRHTF L+ RHS K
Sbjct: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
Query: 59 SRDFEETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCL 118
S DF ETD+ +DN EEC ++K+TVK+LMEDELGKV +KKIP E+QR L DLG+DV L
Sbjct: 61 SSDFVETDDD-DDNKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYDVSL 119
Query: 119 EKSSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYH 178
+ S + K A + T + SG + GSKS+ +EE DLE LA+F+GE+Y H
Sbjct: 120 DGGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIYRCH 179
Query: 179 D-----DCKNKSELCPELKSHIHTKLSELKSVPCQRAYEESPDWGQREHFYEKYICNSRS 233
DCKNK ELCP LKS IH KL++L + E+SP+ E NSR+
Sbjct: 180 GECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENSRSNSRA 239
Query: 234 YQSNKLVDAPDMLSPEKELFLKTLQKPSPHTLEKEXXXXXXXXXXXXKLEPRKILEKGE- 292
Q + DA ++LS ELFLK LQKP+ H L+ KLEP K L +
Sbjct: 240 AQFKEFKDAVEILSSNNELFLKLLQKPNSHILDN--IRKYQNSRLTTKLEPDKSLGRSSI 297
Query: 293 -NTKNSKQHEVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNKIVILKPNP-RGI 350
K HE+A K KE +++FFWRKD+S K E N + V+KIVILKPN R I
Sbjct: 298 LEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQGRRI 357
Query: 351 DTTVATASTCLDQQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDTRRGRPSVYEDDLQ 410
D T T+S L QQ CT Q+P++ ESSKFSIKEVRRRFKIVTGD++R + ++ ++L
Sbjct: 358 DETETTSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTGDSKREKNAIPAENLP 417
Query: 411 RDSQRINDSVFKVRK----------DSKQSD-KDNLRPLTSGKQKQRNDGLGEINGDIIT 459
DS ++ DSV + + D S+ K+ ++P S KQKQ+ND EI+
Sbjct: 418 GDSHQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPSASSKQKQQNDSQSEISDHTTG 477
Query: 460 SKDTSIFYEEAKKHLTDILEYNSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPRLKGR 519
+ SIFYE+AKKHL D+L+ S + +PT SKSL GMLS P N S PRS R K
Sbjct: 478 A---SIFYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRSDHRGKCH 534
Query: 520 IDLSPEEINISAIQQDERTEYAKERDLSDEDSGSVACGNSEVLDGKADQDRHSMKQETAQ 579
SPEE + ++ + E A+ER ++S S A S +D + +E Q
Sbjct: 535 NAFSPEEPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEECGIKEDTQ 594
Query: 580 DGDIMHIEEID--------KPACSETICSEGITLKEQCTCTSSLELIEGAEPGREHAGML 631
+G I +E+D K CS+TIC+ EQ T + E++EG E G+E M
Sbjct: 595 EGIIYATDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTE-GKEPVQMF 653
Query: 632 LSYPENVVESLEHQEPKTPRSSASLELISQISPEGNHEKQEQPSPVSVLDPFFCEDVDSP 691
+S PE++VE+LE Q+PKTP +S +L PE ++EK+EQPSPVSVLD F ED SP
Sbjct: 654 MSSPESMVENLEQQDPKTPEPKSSPKLPDGC-PEQSNEKKEQPSPVSVLDSFD-EDDSSP 711
Query: 692 DHETMIKCEMHQ-DMMRPHIPDAISDQWVFWEDEDARLSYIKAMLELSELCTYQNLEVWY 750
+ +TM K E+H+ + PD S VFWED++ARL YI +LELSELC QNLEVWY
Sbjct: 712 ECKTMKKYELHEVSCGTLYFPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWY 771
Query: 751 LEDELISPCMIEEL-HQGNQTDDLKLPFDCICEAITIIQETYFRNPPCLSFLMHKIQPPP 809
LEDELISPCM EEL +QG++ DD+K+ FDCICEA+T IQE YFR LSF+ H I+ PP
Sbjct: 772 LEDELISPCMFEELQNQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPP 831
Query: 810 MGENLIQEINKHIERHLHNQFPRTLNQLVNIDLEDGTWMNLQLESEEIIVDTWEFILDEL 869
+GE LI E++K+++ +L FP TL Q++ DLE WM+++ ++E I+V+ WEF+LDEL
Sbjct: 832 VGEKLISEVDKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDEL 891
Query: 870 LEEVANDLLI 879
++E DL I
Sbjct: 892 IDEAVFDLWI 901
>Os04g0559200 Conserved hypothetical protein
Length = 864
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 248/936 (26%), Positives = 422/936 (45%), Gaps = 134/936 (14%)
Query: 1 MGKRS--QRLARRQENIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKK 58
M K+S QR + ++GCM GLI M FRR K + D G+ R S R K
Sbjct: 6 MAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISD---GTIRR-----SSVRSDLKG 57
Query: 59 SRDF------EETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADL 112
S DF +E +YG I + ++K LME+E+ Q+ K E QR + +
Sbjct: 58 SEDFHGIIFSDEDKDYGVKTIH---ASRPSIKALMEEEMASGTQILK----ETQRNIFGI 110
Query: 113 GHDVCLEKSSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVG 172
D KS+ E D++L LA +
Sbjct: 111 RSD-----------------------------------DLKSVNLQEGSDVDLDLATSLM 135
Query: 173 ELYGYHDDCKNKSELCPELKSHIHTKL---------SELKSVPC--QRAYEESPDWG-QR 220
ELY H+ ++ + E+ H + + + K + C ++A E +
Sbjct: 136 ELYRNHNGSRDI--ITSEVSDHSSSLIDKEHNTDASTHPKQISCSIEKALEAVAEAVITH 193
Query: 221 EHFYEKYICNSRSYQSNKLVDAPDMLSPEKELFLKTLQKPSPHTLEKEXXXXXXXXXXXX 280
+ KY +S + N+ +DA +LS +E FL L+ PS L+
Sbjct: 194 QSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQCLQNLYTALGNPML 253
Query: 281 KLEPRKILEKGENTKNS-KQHEVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNK 339
+L K + T NS +Q EV+ +S + + FF ++DK +M+ + +S + V++
Sbjct: 254 ELAEDDKQTKSKVTINSLEQSEVS--KYSVQKTHNFFLKEDKLVMRRPPKLNDSPRGVSR 311
Query: 340 IVILKPNPRGIDTTVATASTCLD--QQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDT 397
IVILKP+P T++ ++S Q +Q + + FS++E++RR ++ +
Sbjct: 312 IVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLRELKRRLRLAISNN 371
Query: 398 RRGRPSVYEDDLQRD--SQRINDSVFKVRKDSKQSDKDNLRPLTSGKQKQRNDGLGEING 455
R+ V Q+D +Q+ DS + +K + K + G G G
Sbjct: 372 RKD---VMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPEDSGSG--MG 426
Query: 456 DIITSKDTSIFYEEAKKHLTDILEYNSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPR 515
+ T +S FYE+AKKHL + L+ + T VH S+ +LS + + S P+
Sbjct: 427 NDATHCASSFFYEKAKKHLIERLDNQKNDTSQ-IVHKSEPFGKLLSYSENDTFSQTDCPQ 485
Query: 516 LKGRIDLSPEEINISAIQQDERTEYAKERD-------LSDEDSGSVACGNSEVLDGKADQ 568
+ LS + SA+ E+ + + D L D+ + A N+++ + K D
Sbjct: 486 --EDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSA--NTQLDEFKTDH 541
Query: 569 DRHSMK-----QETAQDGDIMHIEEIDKPACSETICSEGITLKEQCTCTSSLELIEGAEP 623
H +K QE +G + D P S I T T SLE I +
Sbjct: 542 ASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIE----------TSTESLEQINTDQC 591
Query: 624 GREHAGMLLSYPE---NVVESLEHQEPKTPRSSASLE----LISQISPEGNHEKQEQPSP 676
E + + + PE + E + Q +P + L L SPE +K+E+ SP
Sbjct: 592 FAEESQTMNALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSP 651
Query: 677 VSVLDPFFCEDVDSPDHETMIKCEMHQDMMR------------PHIPDAISDQWVFWEDE 724
SVLD F + + SP H+T + E+ R P + + + Q +D+
Sbjct: 652 QSVLDSFLGDGI-SPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQN--TPQEAILDDK 708
Query: 725 DARLSYIKAMLELSELCTYQNLEVWYLEDELISPCMIEELHQGN-QTDDLKLPFDCICEA 783
ARLS+IK +LE S+ + ++ E+WY++ L+ ++ E+ TDD FDC+ EA
Sbjct: 709 QARLSFIKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLFDCVEEA 768
Query: 784 ITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQLVNIDLE 843
+ I++ +F P +++L H ++P P+G LIQE++ I+ + ++ P TL+++V DLE
Sbjct: 769 LCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRVVLKDLE 828
Query: 844 DGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
G+WM+L++++EE+ ++ W+ +LD+LLEE+ DL +
Sbjct: 829 SGSWMDLRVDTEEVAIEVWDTLLDDLLEEMVFDLWL 864
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,560,814
Number of extensions: 1356829
Number of successful extensions: 3401
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3382
Number of HSP's successfully gapped: 3
Length of query: 879
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 769
Effective length of database: 11,292,261
Effective search space: 8683748709
Effective search space used: 8683748709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)