BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0827900 Os02g0827900|AK099911
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0827900  Similar to Signal peptidase 18 subunit (Fragment)   361   e-100
Os06g0273800  Similar to Signal peptidase 18 subunit (Fragment)   216   8e-57
Os05g0297900  Similar to Signal peptidase 18 subunit (Fragment)   209   1e-54

>Os02g0827900 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 191

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/191 (92%), Positives = 176/191 (92%)

Query: 1   MQIRHALVHLITLGMVISSALMIWKGLIIMTGXXXXXXXXXXXXXXXGFERGDILFLQMS 60
           MQIRHALVHLITLGMVISSALMIWKGLIIMTG               GFERGDILFLQMS
Sbjct: 1   MQIRHALVHLITLGMVISSALMIWKGLIIMTGSESPLVVVLSESMELGFERGDILFLQMS 60

Query: 61  KHPIRTGDIVVFNDGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLWL 120
           KHPIRTGDIVVFNDGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLWL
Sbjct: 61  KHPIRTGDIVVFNDGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLWL 120

Query: 121 QQHHIMGRAIGYLPKAGWVTLVMTEKPVIKTNQAANLQVMGCFNSKPNNAGAIRRRHGRV 180
           QQHHIMGRAIGYLPKAGWVTLVMTEKPVIKTNQAANLQVMGCFNSKPNNAGAIRRRHGRV
Sbjct: 121 QQHHIMGRAIGYLPKAGWVTLVMTEKPVIKTNQAANLQVMGCFNSKPNNAGAIRRRHGRV 180

Query: 181 EVDVCAWIMSS 191
           EVDVCAWIMSS
Sbjct: 181 EVDVCAWIMSS 191



>Os06g0273800 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 180

 Score =  216 bits (550), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 123/151 (81%), Gaps = 1/151 (0%)

Query: 1   MQIRHALVHLITLGMVISSALMIWKGLIIMTGXXXXXXXXXXXXXXXGFERGDILFLQMS 60
           MQ+R  L  +I+LGM+++SAL+IWKGLI++TG               GF+RGDILFL MS
Sbjct: 14  MQVRQVLAQIISLGMIVTSALIIWKGLIVVTGSESPVVVVLSGSMEPGFKRGDILFLHMS 73

Query: 61  KHPIRTGDIVVFN-DGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLW 119
           K PIRTG+IVVFN DGREIPIVHRVI+VHER+++A+VD LTKGDNN  DDR+LY HGQLW
Sbjct: 74  KDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNFGDDRLLYAHGQLW 133

Query: 120 LQQHHIMGRAIGYLPKAGWVTLVMTEKPVIK 150
           LQQHHIMGRA+G+LP  GWVT++MTEKP+IK
Sbjct: 134 LQQHHIMGRAVGFLPYVGWVTIIMTEKPIIK 164



>Os05g0297900 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 180

 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 119/151 (78%), Gaps = 1/151 (0%)

Query: 1   MQIRHALVHLITLGMVISSALMIWKGLIIMTGXXXXXXXXXXXXXXXGFERGDILFLQMS 60
           +QIR  L  +I+LGM+++SAL+IWKGL++ TG               GF+RGDILFL MS
Sbjct: 14  IQIRQVLAQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRGDILFLHMS 73

Query: 61  KHPIRTGDIVVFN-DGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLW 119
           K PIRTG+IVVFN DGREIPIVHRVI+VHER ++A+VD LTKGDNN  DDR+LY HGQLW
Sbjct: 74  KDPIRTGEIVVFNIDGREIPIVHRVIKVHEREESAEVDILTKGDNNFGDDRLLYAHGQLW 133

Query: 120 LQQHHIMGRAIGYLPKAGWVTLVMTEKPVIK 150
           L QHHIMGRA+G+LP  GWVT++MTEKP IK
Sbjct: 134 LHQHHIMGRAVGFLPYVGWVTIIMTEKPFIK 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,897,763
Number of extensions: 209618
Number of successful extensions: 467
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)