BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0816300 Os02g0816300|AK071879
(1172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0816300 Armadillo-like helical domain containing protein 2288 0.0
Os04g0507500 Armadillo-like helical domain containing protein 392 e-109
Os02g0617300 Armadillo-like helical domain containing protein 380 e-105
AK110208 76 2e-13
>Os02g0816300 Armadillo-like helical domain containing protein
Length = 1172
Score = 2288 bits (5928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1136/1172 (96%), Positives = 1136/1172 (96%)
Query: 1 MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI 60
MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI
Sbjct: 1 MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI 60
Query: 61 TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML 120
TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML
Sbjct: 61 TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML 120
Query: 121 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI 180
LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI
Sbjct: 121 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI 180
Query: 181 AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS 240
AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS
Sbjct: 181 AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS 240
Query: 241 VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET 300
VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET
Sbjct: 241 VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET 300
Query: 301 QQRHLSPVERVKLMQPQSSSCNSTEIDKVVKVDSGTSFSSVDLQSVQVKASVQHDDMTSK 360
QQRHLSPVERVKLMQPQSSSCNSTEIDKVVKVDSGTSFSSVDLQSVQVKASVQHDDMTSK
Sbjct: 301 QQRHLSPVERVKLMQPQSSSCNSTEIDKVVKVDSGTSFSSVDLQSVQVKASVQHDDMTSK 360
Query: 361 IQPEXXXXXXXXXXXXXXXXXXLEKETSPDKGPDPDKCDSGVNLSSCDPSSATQFILEPT 420
IQPE LEKETSPDKGPDPDKCDSGVNLSSCDPSSATQFILEPT
Sbjct: 361 IQPEGKTDGTTTTGSSFKDTSTLEKETSPDKGPDPDKCDSGVNLSSCDPSSATQFILEPT 420
Query: 421 SELLPSDATVVTIVQDKAECRPNTEQLTQQVQVLGHPSDLLNRSPPVSLKESGNSLKHNP 480
SELLPSDATVVTIVQDKAECRPNTEQLTQQVQVLGHPSDLLNRSPPVSLKESGNSLKHNP
Sbjct: 421 SELLPSDATVVTIVQDKAECRPNTEQLTQQVQVLGHPSDLLNRSPPVSLKESGNSLKHNP 480
Query: 481 IQVNFDGSSGGKLGAQKVKHHTSAPNKSVVRKEPRNNYIPNFRRPLLSKQMTNWFYASNR 540
IQVNFDGSSGGKLGAQKVKHHTSAPNKSVVRKEPRNNYIPNFRRPLLSKQMTNWFYASNR
Sbjct: 481 IQVNFDGSSGGKLGAQKVKHHTSAPNKSVVRKEPRNNYIPNFRRPLLSKQMTNWFYASNR 540
Query: 541 SDLDDKQLILGEMVSNMDVPSSLTEALSLGLKPKSDWMMRVYAFNFLRQSLLEQGPRGIQ 600
SDLDDKQLILGEMVSNMDVPSSLTEALSLGLKPKSDWMMRVYAFNFLRQSLLEQGPRGIQ
Sbjct: 541 SDLDDKQLILGEMVSNMDVPSSLTEALSLGLKPKSDWMMRVYAFNFLRQSLLEQGPRGIQ 600
Query: 601 EVAQNFDKVMRFVSRYLADPHHKIAQAALSSLSEIMPVFKKPFEHYLDKTLPHVFSQLND 660
EVAQNFDKVMRFVSRYLADPHHKIAQAALSSLSEIMPVFKKPFEHYLDKTLPHVFSQLND
Sbjct: 601 EVAQNFDKVMRFVSRYLADPHHKIAQAALSSLSEIMPVFKKPFEHYLDKTLPHVFSQLND 660
Query: 661 PKESIKQQCSAILKLAGEIYSIDSLLPALLRTLEEQKSPKSKLAIIEFANSSFVKCTVSS 720
PKESIKQQCSAILKLAGEIYSIDSLLPALLRTLEEQKSPKSKLAIIEFANSSFVKCTVSS
Sbjct: 661 PKESIKQQCSAILKLAGEIYSIDSLLPALLRTLEEQKSPKSKLAIIEFANSSFVKCTVSS 720
Query: 721 DNYSSSSFLKPWLEKLALLFKDKNSKLKEVSVAGFSSIYSHYDPASLLSFLVSLSMEEQK 780
DNYSSSSFLKPWLEKLALLFKDKNSKLKEVSVAGFSSIYSHYDPASLLSFLVSLSMEEQK
Sbjct: 721 DNYSSSSFLKPWLEKLALLFKDKNSKLKEVSVAGFSSIYSHYDPASLLSFLVSLSMEEQK 780
Query: 781 RLRRAIKQLIPTIESDLEEFLQQRKHKPKVPLFDSFVGAYQPYAKGLVIKQNKHHLHATY 840
RLRRAIKQLIPTIESDLEEFLQQRKHKPKVPLFDSFVGAYQPYAKGLVIKQNKHHLHATY
Sbjct: 781 RLRRAIKQLIPTIESDLEEFLQQRKHKPKVPLFDSFVGAYQPYAKGLVIKQNKHHLHATY 840
Query: 841 QSDCLQADDVFDSALHCLPRISLEVRERRAGKIESESYDESNGHDAEMMDKKSSDTRSSD 900
QSDCLQADDVFDSALHCLPRISLEVRERRAGKIESESYDESNGHDAEMMDKKSSDTRSSD
Sbjct: 841 QSDCLQADDVFDSALHCLPRISLEVRERRAGKIESESYDESNGHDAEMMDKKSSDTRSSD 900
Query: 901 PPRTFDYNVISDNTVESPRKEGTDIKRFEESNESELNITVRNRNVILNSCQDHGPSISRT 960
PPRTFDYNVISDNTVESPRKEGTDIKRFEESNESELNITVRNRNVILNSCQDHGPSISRT
Sbjct: 901 PPRTFDYNVISDNTVESPRKEGTDIKRFEESNESELNITVRNRNVILNSCQDHGPSISRT 960
Query: 961 YHQDEMSQMEEVPEINGPSVSIKNXXXXXXXXXXXXXXXXXXTRELALTLLVEILEKQRK 1020
YHQDEMSQMEEVPEINGPSVSIKN TRELALTLLVEILEKQRK
Sbjct: 961 YHQDEMSQMEEVPEINGPSVSIKNLQQMSSSLLEMLDDPEESTRELALTLLVEILEKQRK 1020
Query: 1021 AMENCIDTLIVKLLHATKDAALKVVNQAHICLTTVVTQFDPLTCLRAIASQLANQDEKVL 1080
AMENCIDTLIVKLLHATKDAALKVVNQAHICLTTVVTQFDPLTCLRAIASQLANQDEKVL
Sbjct: 1021 AMENCIDTLIVKLLHATKDAALKVVNQAHICLTTVVTQFDPLTCLRAIASQLANQDEKVL 1080
Query: 1081 IVSINSLSKLVIRLSQDNLMAHLSIFLPALLDAFENHSPYVRKAVVLCLVDTYLKLGPAF 1140
IVSINSLSKLVIRLSQDNLMAHLSIFLPALLDAFENHSPYVRKAVVLCLVDTYLKLGPAF
Sbjct: 1081 IVSINSLSKLVIRLSQDNLMAHLSIFLPALLDAFENHSPYVRKAVVLCLVDTYLKLGPAF 1140
Query: 1141 LPYLERLDSAQLQLVTTYASRLSQTSFIAVDA 1172
LPYLERLDSAQLQLVTTYASRLSQTSFIAVDA
Sbjct: 1141 LPYLERLDSAQLQLVTTYASRLSQTSFIAVDA 1172
>Os04g0507500 Armadillo-like helical domain containing protein
Length = 626
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 182/319 (57%), Positives = 238/319 (74%)
Query: 1 MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI 60
++E+N+R+ E SD + ++ N + SP+ K R+++L GD DI
Sbjct: 210 LREINSRLERIEPKVPTSDGNIMQYKAVESRSVSVNPKRGSPRTKSTPRESTLFGGDTDI 269
Query: 61 TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML 120
T K + P++V SEK+L RE E++A+TL P+ +W++RI AMQR+E LV GGA DY +F ML
Sbjct: 270 TEKPVEPVRVHSEKELLREFEKIAATLVPEKDWSVRIAAMQRIEALVYGGAIDYPSFLML 329
Query: 121 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI 180
LKQLV PL TQ+ DRRSS+VKQACHLLN LSKELL DFEPCAEL IP+L K VVIT+ VI
Sbjct: 330 LKQLVPPLSTQLSDRRSSIVKQACHLLNVLSKELLGDFEPCAELFIPMLFKLVVITVLVI 389
Query: 181 AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS 240
AES+D CIK +LRNCK++RILP+I + AKND+SAVLRARCCEYA+L+LE W D PEIQRS
Sbjct: 390 AESADTCIKTILRNCKISRILPRIADTAKNDRSAVLRARCCEYALLILEYWADAPEIQRS 449
Query: 241 VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET 300
DLYE+ IKCC+ DA SEVR++AR+CYR+F++ WPERS +LF SF+ + Q+ INDED
Sbjct: 450 ADLYEDLIKCCVADAMSEVRATARSCYRLFAKTWPERSRRLFMSFDPAIQRTINDEDGGV 509
Query: 301 QQRHLSPVERVKLMQPQSS 319
+R+ SP R +++QP S
Sbjct: 510 HKRYASPSLRERVVQPSRS 528
>Os02g0617300 Armadillo-like helical domain containing protein
Length = 755
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/324 (56%), Positives = 239/324 (73%), Gaps = 1/324 (0%)
Query: 1 MKEMNARMGNGEKTPCISDVQDNRCMTIQIEPTDTNQAKKSPKVKIVTRDASLLAGDGDI 60
+K++N+R+ E SD + I+ N + SP+ K TR+++L GD DI
Sbjct: 209 LKDINSRLDKIEPKARSSDGARMQYKVIE-RSVSANAKRGSPRKKSSTRESTLFGGDSDI 267
Query: 61 TRKSLGPIKVFSEKDLSREIERVASTLHPDNEWAIRITAMQRVEGLVLGGAADYSAFPML 120
T K + PI+V SEK+L RE+E++AS L P+ +W+IRI AMQR+E LV GGA DY +F L
Sbjct: 268 TEKPVEPIRVHSEKELLREMEKIASALDPEKDWSIRIAAMQRIEALVYGGAIDYPSFLTL 327
Query: 121 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNVVITIHVI 180
LKQLV PL Q+ DRRSS+VKQACHLLN LSKELL DFE CAE+ IPVL K VVIT+ VI
Sbjct: 328 LKQLVPPLSAQLSDRRSSIVKQACHLLNMLSKELLGDFEACAEIFIPVLFKLVVITVLVI 387
Query: 181 AESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCEYAILMLELWVDTPEIQRS 240
AES+DNCIK +LRNCKV+RILP I + AKND+SA+LRARC EYAIL+LE W D PEIQR+
Sbjct: 388 AESADNCIKTILRNCKVSRILPLIADTAKNDRSAILRARCSEYAILILEYWADAPEIQRA 447
Query: 241 VDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPERSHQLFSSFESSRQKMINDEDAET 300
D+YE+ IKCC+ DA SEVR++AR+CYRMF++ WPERS +LF SF+ + Q++INDED
Sbjct: 448 SDIYEDLIKCCVADAMSEVRATARSCYRMFTKTWPERSRRLFMSFDPAVQRIINDEDGGL 507
Query: 301 QQRHLSPVERVKLMQPQSSSCNST 324
Q+R+ SP R K +Q +S +++
Sbjct: 508 QKRYPSPSLREKGVQLSHASSHAS 531
>AK110208
Length = 914
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 103 VEGLVLGGAADYSAFPMLLKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCA 162
++ + GGA + F L+K+ P+ +L R+ + A LLN ++ L FEP
Sbjct: 50 IQAITRGGATKLADFVALIKEAAGPINGALLSERTKLSGTAADLLNSIAPRLGERFEPLV 109
Query: 163 ELLIPVLLKNVVITIHVIAESSDNCIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCCE 222
+ +P LL+ T V + ++ + ++++C+ ++P ++ A DK LRA
Sbjct: 110 GVFVPTLLQICARTNKVAVKRAEKSLHFIVKHCRPVGVVP-LLREAVRDKGQGLRAVAAG 168
Query: 223 YAILMLELWVDTPEIQRSVDLYEEFIKCCIEDATSEVRSSARACYRMFSRIWPER 277
+ +LE D + R V E I+ D+ +EVR ++ + + +WPER
Sbjct: 169 TLVAVLE-CTDRDRLARRVADVEAAIRSGATDSNAEVRQISKRLFEQYVAVWPER 222
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,356,029
Number of extensions: 1389574
Number of successful extensions: 3731
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3725
Number of HSP's successfully gapped: 4
Length of query: 1172
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1060
Effective length of database: 11,187,833
Effective search space: 11859102980
Effective search space used: 11859102980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 162 (67.0 bits)