Os04g0507500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os04g0507500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.56 | 0.247 | 9.4 | 1.29 | 0.733 | 0.411 | 0.423 | -0.0345 | 0.632 | 18.9 | 91.26 | 34 | -- | -- |
| 27.44 | 0.244 | 9.41 | 1.3 | 0.723 | 0.437 | 0.453 | -- | 0.624 | 19 | 92.65 | 32 | -- | -- |
| 27.97 | 0.246 | 9.4 | 1.29 | 0.731 | 0.41 | -- | -0.117 | 0.628 | 18.9 | 91.69 | 38 | -- | -- |
| 27.93 | 0.246 | 9.4 | 1.28 | 0.736 | 0.459 | -- | -- | 0.622 | 19 | 92.82 | 41 | -- | -- |
| 47.91 | 0.322 | 9.47 | 1.61 | -- | -0.466 | -- | -0.582 | 0.482 | -- | 85.64 | 646 | -- | -- |
| 31.22 | 0.262 | 9.42 | 1.33 | 0.625 | -- | 0.357 | -- | 0.562 | 19.7 | -- | -- | -- | -- |
| 31.57 | 0.263 | 9.42 | 1.32 | 0.627 | -- | -- | -- | 0.563 | 19.6 | -- | -- | -- | -- |
| 38.52 | 0.289 | 9.41 | 1.32 | -- | -0.692 | -- | -- | 0.518 | -- | 64.6 | 589 | -- | -- |
| 70.48 | 0.393 | 9.43 | -- | 0.762 | 0.558 | -- | -- | 0.515 | 18.6 | 90.73 | 26 | -- | -- |
| 52.7 | 0.339 | 9.4 | 1.32 | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
| 77.83 | 0.413 | 9.45 | -- | 0.617 | -- | -- | -- | 0.415 | 19.8 | -- | -- | -- | -- |
| 83.04 | 0.424 | 9.44 | -- | -- | -0.774 | -- | -- | 0.399 | -- | 28.3 | 650 | -- | -- |
| 98.4 | 0.463 | 9.43 | -- | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.32 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 2 | 25.92 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 21 | 25.99 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 59 | 26.23 | humidity | 90 | 10 | > th | dose dependent | sin | 5 | NA |
| 82 | 26.57 | wind | 1 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 83 | 26.59 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 94 | 26.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 97 | 26.68 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 164 | 26.92 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 12 |
| 185 | 26.97 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 190 | 26.99 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 8 |
| 200 | 27.03 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 233 | 27.11 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 234 | 27.11 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 237 | 27.12 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 246 | 27.15 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 1 |
| 256 | 27.17 | humidity | 90 | 10 | > th | dose independent | sin | 4 | NA |
| 259 | 27.17 | wind | 1 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 367 | 27.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 371 | 27.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 379 | 27.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 380 | 27.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 390 | 27.35 | wind | 1 | 1440 | > th | dose independent | sin | 12 | NA |
| 419 | 27.37 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 464 | 27.40 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 9 |
| 475 | 27.41 | humidity | 90 | 10 | < th | dose independent | sin | 6 | NA |
| 507 | 27.43 | wind | 1 | 1440 | < th | dose independent | sin | 12 | NA |
| 548 | 27.46 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 576 | 27.49 | humidity | 90 | 270 | > th | dose independent | rect. | 24 | 3 |
| 577 | 27.49 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 5 |
| 578 | 27.49 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 7 |
| 657 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 676 | 27.56 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 693 | 27.58 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 713 | 27.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 732 | 27.61 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 11 |
| 763 | 27.63 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 773 | 27.64 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 778 | 27.64 | wind | 1 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 794 | 27.66 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 806 | 27.67 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 807 | 27.67 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 905 | 27.74 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 945 | 27.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 963 | 27.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 994 | 27.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |