BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0507500 Os04g0507500|AK067306
         (626 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20190.1  | chr2:8711862-8718813 REVERSE LENGTH=1440           868   0.0  

>AT2G20190.1 | chr2:8711862-8718813 REVERSE LENGTH=1440
          Length = 1439

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/623 (68%), Positives = 512/623 (82%), Gaps = 6/623 (0%)

Query: 1   MEAALEAARAKDTKERLAGVERLHEALDAAARQRGLTAGEVTALVDTCMDLIRDANFRXX 60
           ME ALE ARAKDTKER+A VERLH+ L+A+  ++ L+  EVT+LVD+C+DL++D+NFR  
Sbjct: 1   MEEALEMARAKDTKERMAAVERLHQLLEAS--RKSLSPAEVTSLVDSCLDLLKDSNFRVS 58

Query: 61  XXXXXXXXXXXXXXXDHFKIHLNALVPAAVERLGDGKQPVREAARQLLITLMEVSSPTII 120
                          +H K+HLNALVPA VERLGD KQPVR+AAR+LL TLMEVSSPTII
Sbjct: 59  QGALQALASAAVLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEVSSPTII 118

Query: 121 VERAGSYAWTHKSWRVREEFVRTVATAVGLFASTELPLQRVLLSPVLQLMNDSNQSVRDA 180
           VERAGSYAW HKSWRVREEF RTV +A+GLFASTELPLQRV+L+P+LQ++ND NQ+VR+A
Sbjct: 119 VERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQRVILAPILQMLNDPNQAVREA 178

Query: 181 AIYCIEEMYTHMGSQFHEELQRHNLPPYMLREINSRLERIEPKVPTSDGNIMQYKAVESR 240
           AI CIEEMY   GSQF EELQRH+LP YM+++IN+RLERIEP++ ++DG    +   E +
Sbjct: 179 AILCIEEMYMQGGSQFREELQRHHLPSYMVKDINARLERIEPQLRSTDGRSAHHVVNEVK 238

Query: 241 SVSVNPKRGSPRTKSTPRESTLFGGDTDITEKPVEPVRVHSEKELLREFEKIAATLVPEK 300
           + SVNPK+ SPR K+  RE++LFGGD DITEKP+EP++V+SEKEL+REFEKIAATLVPEK
Sbjct: 239 ASSVNPKKSSPRAKAPTRENSLFGGDADITEKPIEPIKVYSEKELIREFEKIAATLVPEK 298

Query: 301 DWSVRIAAMQRIEALVYGGAIDYPSFLMLLKQLVPPLSTQLSDRRSSIVKQACHLLNVLS 360
           DWS+RI+AM+R+E LV GGA DY  F  LLKQLV PLSTQL+DRRS+IVKQACHLL +LS
Sbjct: 299 DWSMRISAMRRVEGLVAGGATDYSCFRGLLKQLVGPLSTQLADRRSTIVKQACHLLCLLS 358

Query: 361 KELLGDFEPCAELFIPMLFKLVVITVLVIAESADTCIKTILRNCKISRILPRIADTAKND 420
           KELLGDFE CAE FIP+LFKLVVITVLVIAESAD CIKT+LRNCK +R+LPRIA++AK+D
Sbjct: 359 KELLGDFEACAETFIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHD 418

Query: 421 RSAVLRARCCEYALLILEYWADAPEIQRSADLYEDLIKCCVADAMSEVRATARSCYRLFA 480
           R+A+LRARCCEYALL LE+W DAPEIQRS DLYEDLI+CCVADAMSEVRATAR CYR+FA
Sbjct: 419 RNAILRARCCEYALLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFA 478

Query: 481 KTWPERSRRLFMSFDPAIQRTINDEDGGVHKRYASPSLRERVVQPSRSLSHASGTSAL-G 539
           KTWP+RSRRLF SFDP IQR IN+EDGG+H+R+ASPS+RER  QP  S S  S  S L G
Sbjct: 479 KTWPDRSRRLFSSFDPVIQRLINEEDGGIHRRHASPSVRERHSQP--SFSQTSAPSNLPG 536

Query: 540 YGTSAIVAMDKTAAIXXXXXXXXXXXXXXXXKTVGRSSERSLESVLNSSKEKVSAIESLL 599
           YGTSAIVAMD+++                  K V + SERSLESVL SSK+KVSAIES+L
Sbjct: 537 YGTSAIVAMDRSSN-LSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESML 595

Query: 600 KGVSISDRQNISATRSTSLDLGI 622
           +G+ ISDRQN +A RS+SLDLG+
Sbjct: 596 RGLHISDRQNPAALRSSSLDLGV 618



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,306,778
Number of extensions: 430975
Number of successful extensions: 1374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1368
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 521
Effective length of database: 8,227,889
Effective search space: 4286730169
Effective search space used: 4286730169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)