Os02g0617300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os02g0617300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.88 | 0.46 | 8.72 | -1.09 | 0.967 | 1.22 | -0.316 | -1.23 | -0.712 | 22.8 | 21.86 | 6943 | -- | -- |
| 95.85 | 0.456 | 8.69 | -0.912 | 0.954 | 1.41 | -0.292 | -- | -0.721 | 22.9 | 18.22 | 8243 | -- | -- |
| 96.28 | 0.457 | 8.72 | -1.1 | 0.971 | 1.22 | -- | -1.33 | -0.718 | 22.9 | 21.98 | 6961 | -- | -- |
| 96.23 | 0.457 | 8.69 | -0.902 | 0.959 | 1.41 | -- | -- | -0.719 | 22.9 | 18.17 | 8241 | -- | -- |
| 151.8 | 0.574 | 8.69 | -0.964 | -- | 1.46 | -- | -0.934 | -0.63 | -- | 21.42 | 5292 | -- | -- |
| 145.61 | 0.566 | 8.58 | -0.11 | 1.03 | -- | -0.193 | -- | -0.221 | 23.1 | -- | -- | -- | -- |
| 145.77 | 0.565 | 8.58 | -0.102 | 1.03 | -- | -- | -- | -0.22 | 23.1 | -- | -- | -- | -- |
| 149.92 | 0.57 | 8.63 | -0.736 | -- | 1.55 | -- | -- | -0.534 | -- | 20.14 | 3720 | -- | -- |
| 106.69 | 0.481 | 8.67 | -- | 0.908 | 0.958 | -- | -- | -0.528 | 22.8 | 26.2 | 8239 | -- | -- |
| 212.52 | 0.681 | 8.56 | -0.078 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 146.05 | 0.565 | 8.58 | -- | 1.03 | -- | -- | -- | -0.209 | 23.1 | -- | -- | -- | -- |
| 144.66 | 0.56 | 8.65 | -- | -- | 1.65 | -- | -- | -0.554 | -- | 20.87 | 897 | -- | -- |
| 212.68 | 0.681 | 8.55 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 2 | 95.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 4 | 95.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 5 | 95.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 9 | 96.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 17 | 96.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 20 | 96.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 22 | 96.62 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 24 | 96.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 26 | 96.69 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 44 | 97.03 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 69 | 97.32 | wind | 7 | 43200 | > th | dose independent | sin | 5 | NA |
| 70 | 97.34 | wind | 5 | 43200 | > th | dose dependent | sin | 4 | NA |
| 75 | 97.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 82 | 97.44 | wind | 7 | 43200 | < th | dose independent | sin | 5 | NA |
| 83 | 97.45 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 90 | 97.55 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 95 | 97.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 113 | 97.75 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 121 | 97.83 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 149 | 98.04 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 151 | 98.05 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 153 | 98.05 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 157 | 98.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 162 | 98.11 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 163 | 98.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 174 | 98.18 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 189 | 98.21 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 258 | 98.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 340 | 98.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 349 | 98.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 363 | 98.89 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 373 | 98.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 431 | 99.08 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 437 | 99.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 470 | 99.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 486 | 99.25 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 487 | 99.25 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 495 | 99.27 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 501 | 99.28 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 510 | 99.29 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 517 | 99.31 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 531 | 99.34 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 544 | 99.37 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 595 | 99.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 599 | 99.45 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 628 | 99.51 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 20 |
| 644 | 99.53 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 666 | 99.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 679 | 99.58 | temperature | 20 | 14400 | > th | dose dependent | sin | 15 | NA |
| 865 | 99.83 | temperature | 20 | 4320 | > th | dose dependent | sin | 5 | NA |
| 869 | 99.84 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 881 | 99.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 925 | 99.89 | wind | 9 | 43200 | < th | dose independent | sin | 23 | NA |
| 950 | 99.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 973 | 99.92 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 8 |