BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0805000 Os02g0805000|AK071884
(489 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0805000 Adaptin, N-terminal domain containing protein 962 0.0
Os06g0167100 Armadillo-like helical domain containing protein 844 0.0
AK110215 496 e-140
Os01g0916200 Armadillo-like helical domain containing protein 186 3e-47
>Os02g0805000 Adaptin, N-terminal domain containing protein
Length = 489
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/489 (96%), Positives = 470/489 (96%)
Query: 1 MDTVEKIVEDFASDIAMGPFSSGTRLRDMIRAIRACKTXXXXXXXXXXXXXXXXXXXGEN 60
MDTVEKIVEDFASDIAMGPFSSGTRLRDMIRAIRACKT GEN
Sbjct: 1 MDTVEKIVEDFASDIAMGPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAEIREAIGEN 60
Query: 61 QQEIRHRNMAKLMFIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLM 120
QQEIRHRNMAKLMFIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLM
Sbjct: 61 QQEIRHRNMAKLMFIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLM 120
Query: 121 LVTNSLKQDLNHSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCA 180
LVTNSLKQDLNHSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCA
Sbjct: 121 LVTNSLKQDLNHSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCA 180
Query: 181 IRIVRKVPDLAENFMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLV 240
IRIVRKVPDLAENFMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLV
Sbjct: 181 IRIVRKVPDLAENFMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLV 240
Query: 241 RILRDVSNSSYAPEYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNES 300
RILRDVSNSSYAPEYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNES
Sbjct: 241 RILRDVSNSSYAPEYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNES 300
Query: 301 NKNAANAILYECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDT 360
NKNAANAILYECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDT
Sbjct: 301 NKNAANAILYECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDT 360
Query: 361 QAVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDL 420
QAVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDL
Sbjct: 361 QAVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDL 420
Query: 421 TAKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISNASELQGYSVRLLY 480
TAKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISNASELQGYSVRLLY
Sbjct: 421 TAKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISNASELQGYSVRLLY 480
Query: 481 MALQAFVDQ 489
MALQAFVDQ
Sbjct: 481 MALQAFVDQ 489
>Os06g0167100 Armadillo-like helical domain containing protein
Length = 870
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/476 (85%), Positives = 433/476 (90%)
Query: 14 DIAMGPFSSGTRLRDMIRAIRACKTXXXXXXXXXXXXXXXXXXXGENQQEIRHRNMAKLM 73
D+A+ PFSSGTRLRDMIRAIRACKT E Q+ RHRNMAKLM
Sbjct: 2 DLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKLM 61
Query: 74 FIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS 133
FIHMLGYPTHFGQMECLKLIAAAG+PEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS
Sbjct: 62 FIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS 121
Query: 134 NQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCAIRIVRKVPDLAEN 193
NQFIVGLALCALGNICSAEMARDLSPEVERL++SR+ NTKKKAALC+IRIVRKVPDLAEN
Sbjct: 122 NQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAEN 181
Query: 194 FMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLVRILRDVSNSSYAP 253
FMG A SLLKEKHHG+LISAVQLC ELCKASK+ALEYLRKNC++GLVRILRDVSNSSYAP
Sbjct: 182 FMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYAP 241
Query: 254 EYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILYECV 313
EYD+AGI+DPFLHIRVLKLMRILGQGDADCSE++NDILAQVATK ESNKNA NAILYECV
Sbjct: 242 EYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYECV 301
Query: 314 QTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDTQAVQRHRTTILEC 373
+TIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLM+A+ VDTQAVQRHR TILEC
Sbjct: 302 ETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILEC 361
Query: 374 VKDADASIRKRALELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDLTAKICSIVEKFSQ 433
VKDAD SIRKRALELV+LLVND N K LTKELVDYL+ +D DFK+DLTAKICSIVEKFSQ
Sbjct: 362 VKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFSQ 421
Query: 434 EKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISNASELQGYSVRLLYMALQAFVDQ 489
+KLWYLDQMFKVLSLAGN+VKDDVWHAL+V+ISNASELQGYSVR LY AL A +Q
Sbjct: 422 DKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQ 477
>AK110215
Length = 884
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/459 (50%), Positives = 330/459 (71%), Gaps = 1/459 (0%)
Query: 26 LRDMIRAIRACKTXXXXXXXXXXXXXXXXXXXGENQQEIRHRNMAKLMFIHMLGYPTHFG 85
L+ +I+AIR+CKT + RH N+AKL++IHMLGYP HFG
Sbjct: 30 LKALIKAIRSCKTLADERSLIQKESASIRTAFKDEDPFARHNNIAKLLYIHMLGYPAHFG 89
Query: 86 QMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQFIVGLALCAL 145
Q+ECLKL+A + +KR+GYLG+MLLLDE EVL LVTN LK D+ HSN ++ GLALC
Sbjct: 90 QIECLKLVATPRFTDKRLGYLGIMLLLDENTEVLTLVTNGLKNDMEHSNMYVCGLALCTF 149
Query: 146 GNICSAEMARDLSPEVERLMRSRDVNTKKKAALCAIRIVRKVPDLAENFMGLASSLLKEK 205
NI S EM+RDL E+E+LM S + ++KAA+CA+RIVRKVPDL ++F LL +K
Sbjct: 150 ANIASEEMSRDLCNEIEKLMGSSNTYIRRKAAICAMRIVRKVPDLIDHFADRTRQLLSDK 209
Query: 206 HHGILISAVQLCTELCKASKDALEYLRKNCVEGLVRILRDVSNSSYAPEYDVAGISDPFL 265
+HG+L+ AV L E+ + DAL+ R+ V LV+ L+ + + Y+PE+DV+GI+DPFL
Sbjct: 210 NHGVLLCAVTLAIEIVRQDADALQDFRR-AVPLLVQHLKSLVTTGYSPEHDVSGITDPFL 268
Query: 266 HIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILYECVQTIMGIEATSGL 325
+++L+L+R+LG+ +A SE MNDILAQVAT E++KN N+ILYE V TI+ I+A +GL
Sbjct: 269 QVKILRLLRVLGKENAQASEAMNDILAQVATNTEASKNVGNSILYETVLTILEIDADNGL 328
Query: 326 RVLAINILGRFLSNRDNNIRYVALNMLMRAITVDTQAVQRHRTTILECVKDADASIRKRA 385
RV+AINILG+FLSNRDNNIRYVALN L + +++DT AVQRHR IL+C++D D SIR+RA
Sbjct: 329 RVMAINILGKFLSNRDNNIRYVALNTLSKVVSMDTNAVQRHRNIILDCLRDGDISIRRRA 388
Query: 386 LELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDLTAKICSIVEKFSQEKLWYLDQMFKV 445
LEL + L+N++NV+ LT+EL+ +L+ AD +FK +T +IC E+F+ K W++D + +V
Sbjct: 389 LELSYALINESNVRVLTRELLSFLEVADNEFKLGMTTQICLAAERFAPNKRWHIDTVLRV 448
Query: 446 LSLAGNHVKDDVWHALVVVISNASELQGYSVRLLYMALQ 484
L LAGN+V+D++ A + ++ + ELQ Y+V+ L+ AL
Sbjct: 449 LKLAGNYVRDEILSAFIRLVCHTPELQAYTVQKLFSALH 487
>Os01g0916200 Armadillo-like helical domain containing protein
Length = 950
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 211/420 (50%), Gaps = 7/420 (1%)
Query: 71 KLMFIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDL 130
+L++ MLG+ FG + +K+ P KR GYL + L LDER ++++LV N++++DL
Sbjct: 72 RLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDL 131
Query: 131 NHSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCAIRIVRKVPDL 190
N +V AL A + E + P+V L+ +KKA + R ++ P
Sbjct: 132 RSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMALHRFYQRSPSS 191
Query: 191 AENFMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLVRILRDVSNSS 250
+ + L + G++ LC +D Y K+ V V IL+ V+
Sbjct: 192 VSHLVSNFRKRLCDNDPGVM--GATLCPLYDLILEDPNSY--KDLVVSFVNILKQVAERR 247
Query: 251 YAPEYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILY 310
YD + PF+ I++LK++ +LG GD S M +L + K ++ N NAILY
Sbjct: 248 LPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASNIGNAILY 307
Query: 311 ECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDTQAVQRHRTTI 370
EC+ I I + + A +FL + +N++Y+ ++ L R I ++ + H+ +
Sbjct: 308 ECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIAEEHQLAV 367
Query: 371 LECVKDADASIRKRALELVFLLVNDTNVKPLTKELVDYL-DSADPDFKEDLTAKICSIVE 429
++C++D D +++++ EL++ + TNV+ + +++Y+ + D +K ++ ++ + E
Sbjct: 368 IDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIASRCVELAE 427
Query: 430 KFSQEKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISN--ASELQGYSVRLLYMALQAFV 487
+F+ W++ M KV AG+ V V H L+ +I+ E +G +L A+ +++
Sbjct: 428 QFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAEGFGEEDEGADSQLRSSAVDSYL 487
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,736,973
Number of extensions: 503709
Number of successful extensions: 1258
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1246
Number of HSP's successfully gapped: 4
Length of query: 489
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 384
Effective length of database: 11,553,331
Effective search space: 4436479104
Effective search space used: 4436479104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)