BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0801600 Os02g0801600|Os02g0801600
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0801600 219 3e-58
Os02g0801000 215 6e-57
Os02g0800900 215 6e-57
Os02g0800700 215 6e-57
Os02g0800300 Conserved hypothetical protein 215 6e-57
Os02g0801100 197 2e-51
Os02g0800400 197 2e-51
Os08g0122400 Conserved hypothetical protein 103 3e-23
Os02g0813900 88 1e-18
Os02g0798300 Conserved hypothetical protein 67 3e-12
>Os02g0801600
Length = 127
Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 110/127 (86%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
Query: 121 SSVPARA 127
SSVPARA
Sbjct: 121 SSVPARA 127
>Os02g0801000
Length = 127
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 109/127 (85%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
Query: 121 SSVPARA 127
SSVPARA
Sbjct: 121 SSVPARA 127
>Os02g0800900
Length = 127
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 109/127 (85%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
Query: 121 SSVPARA 127
SSVPARA
Sbjct: 121 SSVPARA 127
>Os02g0800700
Length = 127
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 109/127 (85%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
Query: 121 SSVPARA 127
SSVPARA
Sbjct: 121 SSVPARA 127
>Os02g0800300 Conserved hypothetical protein
Length = 127
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 109/127 (85%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKGGA 120
Query: 121 SSVPARA 127
SSVPARA
Sbjct: 121 SSVPARA 127
>Os02g0801100
Length = 122
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 100/118 (84%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
>Os02g0800400
Length = 122
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 100/118 (84%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTN 60
MAQNKTM EEKDIEEAVCSEHCNDEEKEGTIDHKHCVDI ILTN
Sbjct: 1 MAQNKTMALLLATLVAVVAVVRATEEKDIEEAVCSEHCNDEEKEGTIDHKHCVDICILTN 60
Query: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG
Sbjct: 61 RELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
>Os08g0122400 Conserved hypothetical protein
Length = 129
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXE--EKDIEEAVCSEHCNDEEKEGTIDHKHCVDIYIL 58
MAQNKT+ D+ + C++ C +E+++ I +KHC D ++
Sbjct: 1 MAQNKTISVALLLSTLVVVVAAVAATGPPDLLQGWCADACREEQQKDPIYNKHCPDFCVI 60
Query: 59 TNRELFGALERGMKPSMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
+ +++F A + P +E+F+ALC+EGCSKEFKEDPA +KKCVD+CIV +KE + AKG
Sbjct: 61 STKQIFRAYKGATDPPVERFNALCDEGCSKEFKEDPAISKKCVDTCIVMSKEAKEYFAKG 120
Query: 119 GASSVPARA 127
G PA A
Sbjct: 121 GTIGAPAGA 129
>Os02g0813900
Length = 81
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 32 AVCSEHCNDEEKE-GTIDHKHCVDIYILTNRELFGALERGMKPSMEQFSALCNEGCSKEF 90
VC+E + E KE ++KHCVDI I+ N++L G L P+ME+FS +CNEG SKEF
Sbjct: 6 VVCNEGRSKEFKEDPATNNKHCVDICIILNKQLLGPLREKKNPTMEKFSVVCNEGRSKEF 65
Query: 91 KEDPATNKKCVDSCI 105
KEDPATNKKCVDSCI
Sbjct: 66 KEDPATNKKCVDSCI 80
>Os02g0798300 Conserved hypothetical protein
Length = 129
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 1 MAQNKTMXXXXXXXXXXXXXXXXXEEKDIEEAV---CSEHCNDEEKEGTIDHKHCVDIYI 57
MAQNKT+ E + +EEAV C E C++++K+ ID K C D
Sbjct: 1 MAQNKTIAVALLLATLVAVMGK--EPETLEEAVRAGCKEECSEQKKKAPIDEKQCEDFCF 58
Query: 58 LTNRELFGALERGMKP-SMEQFSALCNEGCSKEFKEDPATNKKCVDSCIVDAKELNGHLA 116
+ + +F A +G+K ++F CN C+ +KEDPAT+KKC +SC DAKE L
Sbjct: 59 IKTKSIFEA-HKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEVFLD 117
Query: 117 KGGA 120
K A
Sbjct: 118 KVVA 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,029,978
Number of extensions: 148214
Number of successful extensions: 332
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 10
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)