BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0775600 Os02g0775600|AK068762
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0775600 Zinc finger, C2H2-type domain containing protein 409 e-114
Os09g0445500 Zinc finger, C2H2-type domain containing protein 100 2e-21
Os03g0216000 Similar to Zinc-finger protein KNUCKLES 97 1e-20
Os08g0463500 Zinc finger, C2H2-type domain containing protein 94 1e-19
Os06g0206500 92 4e-19
Os01g0512700 Zinc finger, C2H2-type domain containing protein 70 1e-12
>Os02g0775600 Zinc finger, C2H2-type domain containing protein
Length = 279
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/279 (73%), Positives = 205/279 (73%)
Query: 1 MAKPQDMRSVDSFSQLPFIRXXXXXXXXXRDTIRLFGCEFSNDLQLRPTEAGAGSPDAAN 60
MAKPQDMRSVDSFSQLPFIR RDTIRLFGCEFSNDLQLRPTEAGAGSPDAAN
Sbjct: 1 MAKPQDMRSVDSFSQLPFIRPAPPPQQQARDTIRLFGCEFSNDLQLRPTEAGAGSPDAAN 60
Query: 61 GSTVTXXXXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAK 120
GSTVT RKFECHYCCRNFPTSQALGGHQNAHKRERQHAK
Sbjct: 61 GSTVTSEGSNGGDGGTKNGGAATAAAERKFECHYCCRNFPTSQALGGHQNAHKRERQHAK 120
Query: 121 RAHLQASLAMHRYMPGHMYGLFNYHHHIGGRFDHHXXXXXXXXXXAHYPMWTXXXXXXXX 180
RAHLQASLAMHRYMPGHMYGLFNYHHHIGGRFDHH AHYPMWT
Sbjct: 121 RAHLQASLAMHRYMPGHMYGLFNYHHHIGGRFDHHPPPPPPPPPPAHYPMWTSAAPGAFA 180
Query: 181 XXXXXXQPINGSPVQAGLWSVPPPTENFGSTAGRQGADKLATTVAGTPAAGEVACKDEMV 240
QPINGSPVQAGLWSVPPPTENFGSTAGRQGADKLATTVAGTPAAGEVACKDEMV
Sbjct: 181 GPGSMAQPINGSPVQAGLWSVPPPTENFGSTAGRQGADKLATTVAGTPAAGEVACKDEMV 240
Query: 241 XXXXXXXXXXXXXXXXXXXEMLGRCELGQKEGVSLDLHL 279
EMLGRCELGQKEGVSLDLHL
Sbjct: 241 PMSLLSSSPSLSSCSSTSPEMLGRCELGQKEGVSLDLHL 279
>Os09g0445500 Zinc finger, C2H2-type domain containing protein
Length = 296
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 71/143 (49%), Gaps = 31/143 (21%)
Query: 10 VDSFSQLPFIRXXXXXXXXXR--DTIRLFGCEFSNDLQLRPTEAGAGSPDAANGSTVTXX 67
++SFSQLPF+R +IRLFG E D G AA
Sbjct: 18 IESFSQLPFVRPRPAAMAGSSPASSIRLFGFELPPD----------GVVSAAGLGGGGGG 67
Query: 68 XXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQAS 127
RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA Q++
Sbjct: 68 GG------------------RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAQFQSA 109
Query: 128 LAMHRYMPGH-MYGLFNYHHHIG 149
+AMH + P + Y + H G
Sbjct: 110 MAMHAHYPAYPAYASYYGSHRFG 132
>Os03g0216000 Similar to Zinc-finger protein KNUCKLES
Length = 297
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 114/293 (38%), Gaps = 31/293 (10%)
Query: 4 PQDMRSVDSFSQLPFIRXXXXXXXXXRDT-IRLFGCEFSNDLQLRPTEAGAGSPDAANGS 62
P D +V SFS+LPF+R ++ IRLFG + + + + G +
Sbjct: 19 PHDFANVASFSELPFLRPAPAPRESPNNSAIRLFGIDVPHA-----SSSPDGKASKESVV 73
Query: 63 TVTXXXXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 122
T RKFECHYCCR+FPTSQALGGHQNAHKRERQHAKR
Sbjct: 74 VSTAAAAASTHGAAAAAIAAAADSSRKFECHYCCRHFPTSQALGGHQNAHKRERQHAKRV 133
Query: 123 HLQASLAMHRYMPGHMYGLFNYHHHIGGRFDHHXXXXXXXXXXAHY--PMWTXXXXXXXX 180
+Q ++A + ++H +G HH A Y P W
Sbjct: 134 QMQTAMAAAAAAASGAHHHHHHHQLLGYPQHHHRFGLAGPTVAALYQHPSWPTMSGGGGG 193
Query: 181 XXX----------XXXQPINGSPVQAGLWSVPPPTENFGSTAGRQGADKLATTVAGTPAA 230
QPINGSP+ AGLW P P AG + ++T+
Sbjct: 194 ISSIGPQFYSGIGSVTQPINGSPLPAGLWR-PGPMAAPPLLAGERRPVAVSTS------- 245
Query: 231 GEVACKDEMVXXXXXXXXXXXXXXXXXXXEMLGRCE----LGQKEGVSLDLHL 279
V DE + CE EGVSLDLHL
Sbjct: 246 -SVFRGDEPRASASLVASQTASSSLLLSPQGQFACEQPPATTAAEGVSLDLHL 297
>Os08g0463500 Zinc finger, C2H2-type domain containing protein
Length = 300
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 5 QDMRSVDSFSQLPFIRXXXXXXXXXRDT----------IRLFGCEFSNDLQLRPTEAGAG 54
+D ++DSFSQLPFIR + IRLFG + D G
Sbjct: 8 RDQPNIDSFSQLPFIRQAAREKPPSSSSGGSVVVPPAPIRLFGFDVPPDASTTADVLG-- 65
Query: 55 SPDAANGSTVTXXXXXXXXXXXXXXXXXXXXXXRKFECHYCCRNFPTSQALGGHQNAHKR 114
+ + RKFECHYCCRNFPTSQALGGHQNAHKR
Sbjct: 66 --ENKESAAAVVAAEGSKQTASGLDAIGGGGGSRKFECHYCCRNFPTSQALGGHQNAHKR 123
Query: 115 ERQHAKRAHLQASLAMHRYMPGHMYGLFNYHHHIGGRF-------DHHXXXXXXXXXXAH 167
ERQ AK A Q ++AMH + G Y L + + + H
Sbjct: 124 ERQRAKHAQFQTAMAMH-HGHGQYYPLPDPYAAAFAAYPGHHHHHRFAATAAAAMPPPPH 182
Query: 168 YPMWTXXXXXXXXXXXXXXQPINGSPVQ-AGLWSVP 202
YP W QPINGSPV AG+W +P
Sbjct: 183 YPSWA-AGSRYYSGPGSISQPINGSPVAPAGMWRLP 217
>Os06g0206500
Length = 568
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 51/66 (77%), Gaps = 6/66 (9%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLAMHRYM--PGHM-YG---L 141
R+FECHYC RNFPTSQALGGHQNAHKRERQHA+RAHL+ASLA Y+ H+ YG L
Sbjct: 369 RRFECHYCRRNFPTSQALGGHQNAHKRERQHARRAHLEASLAAAHYLGQSAHLVYGGAAL 428
Query: 142 FNYHHH 147
F Y H
Sbjct: 429 FGYGGH 434
>Os01g0512700 Zinc finger, C2H2-type domain containing protein
Length = 242
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 88 RKFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQASLA 129
R+FEC YCCR F SQALGGHQNAHK+ERQ KRA LQ ++A
Sbjct: 69 RRFECQYCCREFANSQALGGHQNAHKKERQQLKRARLQLAVA 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,914,125
Number of extensions: 255795
Number of successful extensions: 776
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 7
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)