BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0770000 Os02g0770000|AK103425
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0770000 Beta 1 subunit of 20S proteasome 480 e-136
Os06g0139900 Similar to Beta 1 subunit of 20S proteasome 468 e-132
Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteaso... 94 1e-19
AK062648 92 5e-19
Os06g0153800 Beta 5 subunit of 20S proteasome 76 2e-14
>Os02g0770000 Beta 1 subunit of 20S proteasome
Length = 246
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/246 (95%), Positives = 234/246 (95%)
Query: 1 MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT
Sbjct: 1 MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
Query: 61 QLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
QLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ
Sbjct: 61 QLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
Query: 121 AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKF 180
AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAI DHEWKEGMSQEEAEKF
Sbjct: 121 AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKF 180
Query: 181 VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGN 240
VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGN
Sbjct: 181 VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGN 240
Query: 241 PDPMVQ 246
PDPMVQ
Sbjct: 241 PDPMVQ 246
>Os06g0139900 Similar to Beta 1 subunit of 20S proteasome
Length = 246
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/246 (92%), Positives = 231/246 (93%)
Query: 1 MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
MDASLMG+PS AAGD PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT
Sbjct: 1 MDASLMGSPSPAAGDAPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT 60
Query: 61 QLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
QLTDNVY+CRSGSAADTQVIS+YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ
Sbjct: 61 QLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
Query: 121 AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKF 180
AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAI DHEWKEGMSQEEAEKF
Sbjct: 121 AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKF 180
Query: 181 VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGN 240
VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKL LWHEE+EPQNSLLDILAAGN
Sbjct: 181 VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLPLWHEEMEPQNSLLDILAAGN 240
Query: 241 PDPMVQ 246
PDPMVQ
Sbjct: 241 PDPMVQ 246
>Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteasome beta subunit)
Length = 272
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
Query: 23 RMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISD 82
+ GTTIVG+ + GVVL AD+R + G VA++ +KI + N+Y C +G+AADT+ ++D
Sbjct: 36 KTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 95
Query: 83 YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLG 142
V L H G+ + V + L++ + + + A +++GG D G + +V
Sbjct: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVD-VTGPHLHTVYPH 154
Query: 143 GTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTV 202
G+ PFA + ++KEG+++EE + V + + I D SG V
Sbjct: 155 GSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVC 214
Query: 203 TIN 205
I
Sbjct: 215 VIT 217
>AK062648
Length = 295
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 1/195 (0%)
Query: 10 SAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYIC 69
+A G P + GTTIVGV Y GVVL AD+R++ G V ++ +KI + N+Y C
Sbjct: 39 AAGGGKGPAIKAMKTGTTIVGVLYKDGVVLGADTRSTGGSTVMDKNCEKIHYIAPNIYCC 98
Query: 70 RSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWD 129
+G+A DT+ + + L H + + V A L++ + +Q + + A +++GG D
Sbjct: 99 GAGTAVDTENTTALISSQLELHRLNTDTESRVSTAMTLLKRMLFQYQGHVSAALVLGGVD 158
Query: 130 KYEGGQIFSVPLGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAI 189
G +++V G+ + PF ++ +K+G+++ EA++ V + +
Sbjct: 159 -CTGPHLYTVYPHGSTDKLPFVTMGSGSLAAMSVFENGYKDGLTEAEAKRLVQDAILAGV 217
Query: 190 ARDGASGGVVRTVTI 204
D SG V I
Sbjct: 218 WNDLGSGSNVDITII 232
>Os06g0153800 Beta 5 subunit of 20S proteasome
Length = 277
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 4/209 (1%)
Query: 21 EHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVI 80
+H+ GTT + +D GV++AADSR S G Y++++ KI ++ + +G AAD Q
Sbjct: 56 KHKKGTTTLAFIFDKGVIVAADSRASMGGYISSQTVRKIIEINPYMLGTMAGGAADCQFW 115
Query: 81 SDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNM-LQAGMIVGGWDKYEGGQIFSV 139
+ H + + ++ A+ L+ + Y + M L G ++ GWD+ G +
Sbjct: 116 HRNLGIKCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVD 175
Query: 140 PLGGTILRQPFAIXXXXXXXXXXXXDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVV 199
G ++ F++ D ++ M EEA + + + A RDGASGG V
Sbjct: 176 SEGARLMGSRFSV-GSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCV 234
Query: 200 RTVTINADGVSRKFHPGDKLQLWHEELEP 228
+ +G ++ GD + H + P
Sbjct: 235 SVYHVGPNGWTKL--SGDDVGELHYKYYP 261
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,349,947
Number of extensions: 322650
Number of successful extensions: 840
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 5
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)