BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0757700 Os02g0757700|AK103417
(324 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0757700 Cyclin-like F-box domain containing protein 596 e-171
Os06g0219700 Similar to TA2 protein (Fragment) 483 e-137
Os02g0317300 Cyclin-like F-box domain containing protein 89 6e-18
Os02g0317500 Cyclin-like F-box domain containing protein 71 1e-12
Os08g0193900 Cyclin-like F-box domain containing protein 65 5e-11
>Os02g0757700 Cyclin-like F-box domain containing protein
Length = 324
Score = 596 bits (1536), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/324 (91%), Positives = 298/324 (91%)
Query: 1 MGECGGGEYRCWEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVAGPYCWQEIDIEE 60
MGECGGGEYRCWEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVAGPYCWQEIDIEE
Sbjct: 1 MGECGGGEYRCWEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVAGPYCWQEIDIEE 60
Query: 61 WRQQQGKPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRSEI 120
WRQQQGKPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRSEI
Sbjct: 61 WRQQQGKPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRSEI 120
Query: 121 SDAAVESVAPRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLRRVMHPTDVAGKACQR 180
SDAAVESVAPRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLRRVMHPTDVAGKACQR
Sbjct: 121 SDAAVESVAPRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLRRVMHPTDVAGKACQR 180
Query: 181 DEARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVDDKFLQERHPG 240
DEARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVDDKFLQERHPG
Sbjct: 181 DEARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVDDKFLQERHPG 240
Query: 241 LRVLGPGVDDCFENXXXXXXXXXXXXXXXXXXXLMEXXXXXXXAVGSDDEAIWDDGQGLE 300
LRVLGPGVDDCFEN LME AVGSDDEAIWDDGQGLE
Sbjct: 241 LRVLGPGVDDCFENSYLEECSDYSDDSSIYSWELMEDDDDDYYAVGSDDEAIWDDGQGLE 300
Query: 301 NLEVRFYGGGFSESYAGFDWPPSP 324
NLEVRFYGGGFSESYAGFDWPPSP
Sbjct: 301 NLEVRFYGGGFSESYAGFDWPPSP 324
>Os06g0219700 Similar to TA2 protein (Fragment)
Length = 317
Score = 483 bits (1243), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/324 (72%), Positives = 267/324 (82%), Gaps = 7/324 (2%)
Query: 1 MGECGGGEYRCWEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVAGPYCWQEIDIEE 60
MGEC E+RCW+ELLPDALGL+FR L L++VLTVVPRVCKSW RVVAGPYCWQEIDI+E
Sbjct: 1 MGECS--EHRCWDELLPDALGLIFRKLSLKDVLTVVPRVCKSWGRVVAGPYCWQEIDIQE 58
Query: 61 WRQQQGKPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRSEI 120
W QQQ KP+QL RMV MLVARS GS RISVSGLPGDPLF+FIGDHAR+L+T+E+PRS+I
Sbjct: 59 WSQQQSKPDQLKRMVRMLVARSGGSFHRISVSGLPGDPLFTFIGDHARSLKTMELPRSDI 118
Query: 121 SDAAVESVAPRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLRRVMHPTDVAGKACQR 180
SD+ VE+VAPRL NVTFLDISSCTKIGARALEAFGK+CKSL+GLRRVMHPTDV G+A Q
Sbjct: 119 SDSLVENVAPRLSNVTFLDISSCTKIGARALEAFGKHCKSLIGLRRVMHPTDVVGRASQH 178
Query: 181 DEARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVDDKFLQERHPG 240
DEARAIAC MP+LRHLE+GYM+IAT AV++I ++C DL+FLDLRGCW VDDK LQE +PG
Sbjct: 179 DEARAIACNMPKLRHLEIGYMLIATKAVVEIASQCHDLKFLDLRGCWNVDDKLLQESYPG 238
Query: 241 LRVLGPGVDDCFENXXXXXXXXXXXXXXXXXXXLMEXXXXXXXAVGSDDEAIWDDGQGLE 300
L+V+GP VDDC+EN E A GSDDE IWDDGQGLE
Sbjct: 239 LKVVGPYVDDCYEN-----SFWEECSDDSDDSIYWELMDDDYYAAGSDDEGIWDDGQGLE 293
Query: 301 NLEVRFYGGGFSESYAGFDWPPSP 324
LEVRFYGGGFSES+AGFDWPPSP
Sbjct: 294 GLEVRFYGGGFSESHAGFDWPPSP 317
>Os02g0317300 Cyclin-like F-box domain containing protein
Length = 328
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 15/235 (6%)
Query: 5 GGGEYRCWEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVA-GPYCWQEIDIEEWRQ 63
G E R W E+ DAL VF L + ++L VC++W R+ A P W+ +D+
Sbjct: 15 GEVESRDWAEMPSDALAAVFGKLDVTDLLVGAGVVCRAWRRLAAIDPTLWRRVDM----S 70
Query: 64 QQG---KPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRS-E 119
QG + ++ V M V R+ G+ D L +I + A +L++L++
Sbjct: 71 HQGDIMEVDEAVAMARAAVDRAAGTMEAFWADSFVTDGLLLYISERASSLKSLQLSMCLN 130
Query: 120 ISDAAVESVAPRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLR---RVMHPTDVAGK 176
+S+ + P + LDI+ C+ G + GK C L R R D A
Sbjct: 131 VSNEGMAEAMKGFPRLEELDITFCSLYG-DVCASVGKACPELKCFRLNERYTLQMDYAAP 189
Query: 177 ACQRD--EARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAV 229
D EA IA MP+LR L++ + D ++ IL C+ L LD+R C+++
Sbjct: 190 DIMDDDTEALGIASNMPKLRELQLIGNKLTNDGLMSILDHCQHLESLDIRQCYSI 244
>Os02g0317500 Cyclin-like F-box domain containing protein
Length = 330
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Query: 12 WEELLPDALGLVFRNLPLREVLTVVPRVCKSWSRVVA-GPYCWQEIDIEEWRQQQGKPEQ 70
W +L DA+ VF L EVL VC+SW R P W+ +D+ E
Sbjct: 11 WADLPVDAVLAVFERLGAAEVLMGAGVVCRSWLRAATREPRLWRRVDLTACFDPTVDMEA 70
Query: 71 LVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLEIPRS-EISDAAVESVA 129
+ R V R+ G + D L ++ L++L + +IS+ + +V
Sbjct: 71 MARAA---VDRAGGRLEHFAAERFVTDELLLYVAKRTSCLKSLRLRDCIKISEKGLVAVG 127
Query: 130 PRLPNVTFLDISSCTKIGARALEAFGKNCKSLVGLRRVMHPTDVAGKACQRD-EARAIAC 188
P + L++++CT + L+A G+ +L LR DV + + A IAC
Sbjct: 128 KTSPCLEELELTTCTI--SILLKAVGEAFPNLKCLRLNHRWFDVQFDEFRDNFHALGIAC 185
Query: 189 TMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVD 230
+M RLRHL++ + +A+ IL C L LDLR C+ VD
Sbjct: 186 SMHRLRHLQIFANRLRNNALAAILDNCPHLESLDLRQCFNVD 227
>Os08g0193900 Cyclin-like F-box domain containing protein
Length = 396
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 12/232 (5%)
Query: 7 GEYRCWEELLP-DALGLVFRNLPLREVLTVVPRVCKSWSRVVAG-PYCWQEIDIEEWRQQ 64
G+ R W LP DA+ +F L E+L +VC+SW R P W+ ID+
Sbjct: 86 GDARDWAGGLPLDAILAIFHKLDHIEILMGAGQVCRSWRRAARDEPQLWRRIDMRGHADL 145
Query: 65 QGKPEQLVRMVEMLVARSCGSCRRISVSGLPGDPLFSFIGDHARALRTLE-IPRSEISDA 123
+ L M + V RS G C + L F+G+ A ++++L I +I +
Sbjct: 146 SFE-LNLFGMAQAAVRRSAGQCEAFWGEYAADEKLLHFLGERAPSVKSLRLISCYDILNE 204
Query: 124 AVESVAPRLPNVTFLDISSCTKIG-ARALEAFGKNCKSLVGLRRVMHPTD----VAGKAC 178
+ + P + L++S C+ IG + E GK C L +R D
Sbjct: 205 GFSAAIKKFPLLEELELSLCSNIGESNVFEIVGKACPQL---KRFRFSKDCFYSFEDNEY 261
Query: 179 QRDEARAIACTMPRLRHLEMGYMVIATDAVLDILARCRDLRFLDLRGCWAVD 230
+ DE TM LR L++ + + + IL C L LD+R C+ V+
Sbjct: 262 EMDEEALGIATMHELRSLQLFANNLRNEGLAAILDNCPYLESLDIRHCFNVN 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,694,886
Number of extensions: 460824
Number of successful extensions: 1397
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 6
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)