Os02g0317300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0317300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.3 | 0.241 | 10.2 | 0.97 | 0.506 | -1.01 | 0.969 | -0.641 | 0.331 | 23.7 | 25.1 | 89 | -- | -- |
| 26.84 | 0.241 | 10.2 | 0.871 | 0.498 | -0.951 | 0.808 | -- | 0.311 | 23.6 | 25.2 | 89 | -- | -- |
| 29.64 | 0.254 | 10.2 | 0.852 | 0.487 | -0.965 | -- | 0.011 | 0.305 | 23.8 | 25.2 | 98 | -- | -- |
| 29.62 | 0.253 | 10.2 | 0.837 | 0.49 | -0.958 | -- | -- | 0.306 | 23.7 | 25.11 | 96 | -- | -- |
| 37.3 | 0.284 | 10.2 | 0.827 | -- | -0.934 | -- | -0.341 | 0.274 | -- | 27.6 | 813 | -- | -- |
| 39.9 | 0.296 | 10.2 | 1.1 | 0.367 | -- | 0.819 | -- | 0.501 | 22.7 | -- | -- | -- | -- |
| 42.69 | 0.306 | 10.2 | 1.07 | 0.363 | -- | -- | -- | 0.498 | 22.6 | -- | -- | -- | -- |
| 37.47 | 0.285 | 10.2 | 0.82 | -- | -0.895 | -- | -- | 0.312 | -- | 28.78 | 820 | -- | -- |
| 46.22 | 0.317 | 10.2 | -- | 0.542 | -1.3 | -- | -- | 0.164 | 0.0842 | 25.2 | 116 | -- | -- |
| 50.82 | 0.333 | 10.2 | 1.08 | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
| 72.81 | 0.399 | 10.2 | -- | 0.371 | -- | -- | -- | 0.379 | 22.8 | -- | -- | -- | -- |
| 49.28 | 0.327 | 10.2 | -- | -- | -1.2 | -- | -- | 0.136 | -- | 25.2 | 3753 | -- | -- |
| 81.35 | 0.421 | 10.2 | -- | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 2 | 24.76 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 4 | 24.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 6 | 24.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 98 | 25.76 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 191 | 26.31 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 212 | 26.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 215 | 26.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 264 | 26.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 293 | 26.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 297 | 26.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 301 | 26.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 340 | 26.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 346 | 27.00 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 359 | 27.05 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 390 | 27.27 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 433 | 27.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 471 | 27.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 511 | 27.80 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 534 | 27.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 549 | 27.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 579 | 28.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 732 | 28.47 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 760 | 28.55 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 770 | 28.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 808 | 28.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 827 | 28.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 871 | 28.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 903 | 28.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 912 | 28.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 976 | 28.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 1 |