Os08g0193900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0193900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.25 | 0.536 | 3.65 | 0.943 | 0.134 | -0.616 | -0.766 | -1.54 | 0.781 | 8.77 | 24.56 | 264 | -- | -- |
| 133.26 | 0.538 | 3.65 | 0.908 | 0.142 | -0.546 | -0.818 | -- | 0.792 | 9.05 | 22.15 | 268 | -- | -- |
| 132.1 | 0.535 | 3.65 | 0.921 | 0.147 | -0.581 | -- | -1.72 | 0.787 | 8.22 | 24.46 | 253 | -- | -- |
| 136.4 | 0.544 | 3.65 | 0.929 | 0.149 | -0.5 | -- | -- | 0.782 | 8.15 | 20.08 | 264 | -- | -- |
| 133.12 | 0.537 | 3.65 | 0.925 | -- | -0.594 | -- | -1.82 | 0.779 | -- | 24.46 | 266 | -- | -- |
| 139.23 | 0.553 | 3.66 | 0.936 | 0.221 | -- | 0.757 | -- | 0.75 | 2.66 | -- | -- | -- | -- |
| 140.01 | 0.554 | 3.66 | 0.916 | 0.28 | -- | -- | -- | 0.744 | 4.8 | -- | -- | -- | -- |
| 137.55 | 0.546 | 3.65 | 0.935 | -- | -0.509 | -- | -- | 0.786 | -- | 20 | 323 | -- | -- |
| 158.56 | 0.586 | 3.67 | -- | 0.187 | -0.487 | -- | -- | 0.668 | 7.39 | 25.4 | 206 | -- | -- |
| 144.15 | 0.561 | 3.66 | 0.926 | -- | -- | -- | -- | 0.751 | -- | -- | -- | -- | -- |
| 162.12 | 0.596 | 3.68 | -- | 0.297 | -- | -- | -- | 0.642 | 4.7 | -- | -- | -- | -- |
| 160.08 | 0.589 | 3.68 | -- | -- | -0.637 | -- | -- | 0.687 | -- | 35.18 | 281 | -- | -- |
| 166.79 | 0.603 | 3.68 | -- | -- | -- | -- | -- | 0.648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.95 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 2 | 123.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 25 | 124.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 28 | 124.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 36 | 124.06 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 46 | 124.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 78 | 124.36 | temperature | 30 | 14400 | > th | dose independent | sin | 7 | NA |
| 103 | 124.46 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 105 | 124.48 | temperature | 30 | 14400 | < th | dose independent | sin | 8 | NA |
| 188 | 124.57 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 208 | 124.59 | temperature | 30 | 14400 | > th | dose dependent | sin | 23 | NA |
| 266 | 124.61 | temperature | 30 | 14400 | > th | dose dependent | sin | 20 | NA |
| 273 | 124.62 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 417 | 124.66 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 418 | 124.66 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 553 | 125.02 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 568 | 125.04 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 734 | 125.15 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 754 | 125.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 763 | 125.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 765 | 125.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 767 | 125.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 773 | 125.23 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 791 | 125.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 20 |
| 887 | 125.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 888 | 125.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 899 | 125.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 913 | 125.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 917 | 125.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |