BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0754000 Os02g0754000|AK060979
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0754000 TLDc domain containing protein 601 e-172
Os06g0221100 TLDc domain containing protein 414 e-116
Os12g0157200 EF-Hand type domain containing protein 74 1e-13
>Os02g0754000 TLDc domain containing protein
Length = 364
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/364 (82%), Positives = 300/364 (82%)
Query: 1 MGYLPSSLGSKAAHFVSDLTTVILNPISEREPSSPLPXXXXXXXXXXXXXXXXQNSDTPD 60
MGYLPSSLGSKAAHFVSDLTTVILNPISEREPSSPLP QNSDTPD
Sbjct: 1 MGYLPSSLGSKAAHFVSDLTTVILNPISEREPSSPLPEVDKDEEKSEDDKDSEQNSDTPD 60
Query: 61 GPDTSSFRAXXXXXXXXXXXXXXXMEIIPDQNGELGYPTLTPMXXXXXXXXXXXXXXXXX 120
GPDTSSFRA MEIIPDQNGELGYPTLTPM
Sbjct: 61 GPDTSSFRAFLISFLSSSGSSNGSMEIIPDQNGELGYPTLTPMGKSKKGKSGLLSRGKHS 120
Query: 121 IGKIISKAARIGGFKQNVEPKIDREVVDHXXXXXXXXXXXXXXXXASFINLPAMSEPSVL 180
IGKIISKAARIGGFKQNVEPKIDREVVDH ASFINLPAMSEPSVL
Sbjct: 121 IGKIISKAARIGGFKQNVEPKIDREVVDHVESVSPVLELEESKEVASFINLPAMSEPSVL 180
Query: 181 LSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVVGDKEGAV 240
LSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVVGDKEGAV
Sbjct: 181 LSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVVGDKEGAV 240
Query: 241 FGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLALGGGGH 300
FGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLALGGGGH
Sbjct: 241 FGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLALGGGGH 300
Query: 301 FALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDETLALCRTEKPG 360
FALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDETLALCRTEKPG
Sbjct: 301 FALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDETLALCRTEKPG 360
Query: 361 ICRW 364
ICRW
Sbjct: 361 ICRW 364
>Os06g0221100 TLDc domain containing protein
Length = 368
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/367 (59%), Positives = 245/367 (66%), Gaps = 8/367 (2%)
Query: 1 MGYLPSSLGSKAAHFVSDLTTVILNPISEREPS---SPLPXXXXXXX---XXXXXXXXXQ 54
MGYLPS LG KAAH VSDL TVILNP+SERE S LP +
Sbjct: 1 MGYLPS-LGGKAAHLVSDLATVILNPVSERESQRHPSHLPEATEVQENIYEDDDDDNSVK 59
Query: 55 NSDTPDGPDTSSFRAXXXXXXXXXXXXXXXMEIIPDQNGELGYPTLTPMXXXXXXXXXXX 114
NS+ P+GPDTSSFRA +EIIP+ N + YPTLTP+
Sbjct: 60 NSEIPNGPDTSSFRAFLMSFMSSSNSSSDSIEIIPEHNMNMEYPTLTPVGKGSNGRKGLF 119
Query: 115 XXXXXXIGKIISKAARIGGFKQNVEPKIDREVVDHXXXXXXXXXXXXXXXXASFINLPAM 174
IGKII+KA RIGGF+Q ID E V AS LPAM
Sbjct: 120 SRGKHSIGKIINKAGRIGGFRQKPSYSIDGETV-QTEYDAPGLELKGSKESASHDKLPAM 178
Query: 175 SEPSVLLSEVMRFNIYASFPVLAKGMNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVVG 234
SEPS+LLSE MR +Y S PVL +G NW+L+YSTWRHGISLSTLYRRSMLC GYSLL+VG
Sbjct: 179 SEPSMLLSETMRTVLYTSLPVLVQGRNWMLVYSTWRHGISLSTLYRRSMLCAGYSLLIVG 238
Query: 235 DKEGAVFGGLVEAPLQPTSAKKYQGSNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLA 294
D++GAVFGGLVEAPLQP KKYQG+N+CFVFTN+ P IYRPTGANNYFT CSTDYLA
Sbjct: 239 DRKGAVFGGLVEAPLQPLIKKKYQGTNNCFVFTNIAGRPVIYRPTGANNYFTFCSTDYLA 298
Query: 295 LGGGGHFALYLDADLLSGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDETLALC 354
+GGGGHFALYLD DLL+GSSS SETFNN CLS S +F VKDVELWGFV SKYDE L +C
Sbjct: 299 MGGGGHFALYLDGDLLNGSSSTSETFNNPCLSRSREFEVKDVELWGFVNASKYDEMLTIC 358
Query: 355 RTEKPGI 361
RTEK GI
Sbjct: 359 RTEKQGI 365
>Os12g0157200 EF-Hand type domain containing protein
Length = 425
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 200 MNWVLLYSTWRHGISLSTLYRRSMLCPGYSLLVVGDKEGAVFGGLVEAPLQPTSAKKYQG 259
W LLY + HG S +T ++++V D EG VFGG P + S + G
Sbjct: 240 QEWRLLYHSSLHGQSFNTFLGNVTNGDAQTVIIVKDTEGFVFGGYASHPWERHS--DFYG 297
Query: 260 SNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLA------LGGGG---HFALYLDADLL 310
F+F L+ SI+RPTG N C+ ++ + +G GG HF +L A+
Sbjct: 298 DMKTFLF-KLYPEASIFRPTGGNRNLQWCAVNFSSDSIPNGIGFGGQPHHFGFFLSANFD 356
Query: 311 SGSSSNSETFNNMCLSHSPDFAVKDVELWGFVYPSKYDETLALCR 355
G S TF + LS + F + +E WG DE L +
Sbjct: 357 QGHSFTCTTFTSPALSKTNRFRPEVIECWGIQTKGALDEKAELVK 401
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,981,997
Number of extensions: 416050
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)