Os06g0221100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TLDc domain containing protein.
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Os06g0221100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TLDc domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.8 | 0.261 | 11.2 | 0.634 | 0.722 | -0.362 | -0.192 | 5.42 | -0.151 | 7.04 | 29.75 | 1135 | -- | -- |
| 31.98 | 0.263 | 11.3 | -0.253 | 0.713 | 0.308 | -0.148 | -- | -0.152 | 6.93 | 29.72 | 4023 | -- | -- |
| 30.88 | 0.259 | 11.2 | 0.609 | 0.726 | -0.35 | -- | 5.4 | -0.147 | 7.05 | 29.62 | 1096 | -- | -- |
| 32.03 | 0.264 | 11.3 | -0.268 | 0.73 | 0.296 | -- | -- | -0.158 | 6.99 | 29.88 | 3904 | -- | -- |
| 57.63 | 0.354 | 11.2 | 0.834 | -- | -0.45 | -- | 6.15 | -0.132 | -- | 29.79 | 1285 | -- | -- |
| 34.82 | 0.277 | 11.3 | -0.193 | 0.732 | -- | -0.202 | -- | -0.208 | 6.85 | -- | -- | -- | -- |
| 34.92 | 0.277 | 11.3 | -0.197 | 0.731 | -- | -- | -- | -0.207 | 6.85 | -- | -- | -- | -- |
| 58.68 | 0.357 | 11.3 | -0.32 | -- | 0.37 | -- | -- | -0.191 | -- | 34.72 | 7048 | -- | -- |
| 33.81 | 0.271 | 11.3 | -- | 0.721 | 0.267 | -- | -- | -0.127 | 7.09 | 31.2 | 3952 | -- | -- |
| 62.91 | 0.371 | 11.3 | -0.181 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 35.94 | 0.28 | 11.3 | -- | 0.729 | -- | -- | -- | -0.185 | 6.87 | -- | -- | -- | -- |
| 59.97 | 0.361 | 11.3 | -- | -- | 0.315 | -- | -- | -0.169 | -- | 34.7 | 7056 | -- | -- |
| 63.77 | 0.373 | 11.3 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.02 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 2 | 30.04 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 30.27 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 12 | 30.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 13 | 30.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 14 | 30.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 16 | 30.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 24 | 31.05 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 28 | 31.07 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 47 | 31.09 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 50 | 31.10 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 109 | 31.15 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 111 | 31.15 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 149 | 31.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 151 | 31.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 152 | 31.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 183 | 31.20 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 382 | 31.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 407 | 31.27 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 412 | 31.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 414 | 31.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 435 | 31.30 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 460 | 31.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 480 | 31.32 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 481 | 31.32 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 486 | 31.32 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 488 | 31.32 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 489 | 31.32 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 547 | 31.34 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 548 | 31.34 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 553 | 31.34 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 572 | 31.35 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 594 | 31.35 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 624 | 31.36 | radiation | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 625 | 31.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 657 | 31.37 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 704 | 31.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 17 |
| 735 | 31.40 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 790 | 31.41 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 794 | 31.41 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 10 |
| 934 | 31.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 939 | 31.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 977 | 31.44 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |