BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0221100 Os06g0221100|AK102978
         (368 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39870.1  | chr4:18502234-18504275 FORWARD LENGTH=395          289   1e-78
AT2G05590.2  | chr2:2067196-2068951 FORWARD LENGTH=304            206   1e-53
AT5G06260.1  | chr5:1902755-1904835 REVERSE LENGTH=425             77   2e-14

>AT4G39870.1 | chr4:18502234-18504275 FORWARD LENGTH=395
          Length = 394

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/395 (43%), Positives = 228/395 (57%), Gaps = 35/395 (8%)

Query: 1   MGYLPSLGGKAAHLVSDLATVILNPVSERESQRHPSHLPEATEV--QENIYEDDDDDNSV 58
           MG   S   KA H V+DL   +LNP+S++ S  HP       E   + N  E      + 
Sbjct: 1   MGKHKSFRSKAVHFVTDLTAGLLNPISDKPSSAHPPPPLPDEEDESKRNQLEST---TAE 57

Query: 59  KNSEIPNGPDTSSFRAFL------------------MXXXXXXXXXXXXIEIIPEHNMNM 100
           +  ++ + PDTSSF AFL                                    + + + 
Sbjct: 58  QPKDLVDEPDTSSFSAFLGSLLSSDPKDKRKDQDPEDEEDEEEDEEEDSEAETSDTSSSS 117

Query: 101 EYPTLT--PVGKGSNGRKGLFSRGKHSIGKIINKAGRIGGFRQKPSYSIDGETVQTEYDA 158
             PT T      G   +K   S+ K             G   +K +  +  +  +TEY  
Sbjct: 118 ANPTRTMKETTSGGAAKKSFLSKYKQHFRNFYQAVKFPGVKERKGNSDVIPDDEETEY-Y 176

Query: 159 PGLELKGSKESASHDK--------LPAMSEPSMLLSETMRTVLYTSLPVLVQGRNWMLVY 210
            GLE+K  + +   ++        +P +SEPS+LLSE  R  LYTSLP LVQGR W+L+Y
Sbjct: 177 DGLEMKPMQNNNVKEEVTVVVQAIIPEISEPSLLLSEQSRRSLYTSLPALVQGRKWILLY 236

Query: 211 STWRHGISLSTLYRRSMLCAGYSLLIVGDRKGAVFGGLVEAPLQPLIKKKYQGTNNCFVF 270
           STWRHGISLSTLYR+S+L  G SLL+VGDRKG+VFGGLVEAPL P   KKYQGTN+ FVF
Sbjct: 237 STWRHGISLSTLYRKSLLWPGLSLLVVGDRKGSVFGGLVEAPLIP-TDKKYQGTNSTFVF 295

Query: 271 TNIAGRPVIYRPTGANNYFTFCSTDYLAMGGGGHFALYLDGDLLNGSSSTSETFNNPCLS 330
           TN +G+P IYRPTGAN ++T CS ++LA+GGGG FALYLD +LL+GSS+ SET+ N CL+
Sbjct: 296 TNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSSAYSETYGNSCLA 355

Query: 331 RSREFEVKDVELWGFVNASKYDEMLTICRTEKQGI 365
            S++F+VK+VELWGFV  SKYDE+L   +T + G+
Sbjct: 356 DSQDFDVKEVELWGFVYGSKYDEILAHSKTMEPGL 390



>AT2G05590.2 | chr2:2067196-2068951 FORWARD LENGTH=304
          Length = 303

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/178 (54%), Positives = 128/178 (71%)

Query: 174 KLPAMSEPSMLLSETMRTVLYTSLPVLVQGRNWMLVYSTWRHGISLSTLYRRSMLCAGYS 233
           K+  ++E S+ ++  +   L+ SLP +V+G  W+L+YST +HGISL TL RRS    G  
Sbjct: 124 KMRELTESSVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGPC 183

Query: 234 LLIVGDRKGAVFGGLVEAPLQPLIKKKYQGTNNCFVFTNIAGRPVIYRPTGANNYFTFCS 293
           LL+ GD++GAVFG L+E PLQP  K+KYQGT+  F+FT I G P I+RPTGAN Y+  C 
Sbjct: 184 LLVAGDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCM 243

Query: 294 TDYLAMGGGGHFALYLDGDLLNGSSSTSETFNNPCLSRSREFEVKDVELWGFVNASKY 351
            ++LA GGGG+FAL LD DLL  +S  SETF N CL+ S EFE+K+VELWGF +AS+Y
Sbjct: 244 NEFLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGFAHASQY 301



>AT5G06260.1 | chr5:1902755-1904835 REVERSE LENGTH=425
          Length = 424

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 206 WMLVYSTWRHGISLST-LYRRSMLCAGYSLLIVGDRKGAVFGGLVEAPLQPLIKKKYQGT 264
           W L+Y +  HG S +T L   S      S+LI+ D +G V+GG    P +      + G 
Sbjct: 238 WKLLYHSSVHGQSFNTFLGHTSNTGMSASVLIIKDTEGYVYGGYASQPWERY--SDFYGD 295

Query: 265 NNCFVFTNIAGRPVIYRPTGANNYFTFCSTDYLA------MGGGG---HFALYLDGDLLN 315
              F+F  +  +  IYRPTGAN    +C+T++ +      +G GG   HF L++      
Sbjct: 296 MKSFLF-QLNPKAAIYRPTGANTNIQWCATNFTSENIPNGIGFGGKINHFGLFISASFDQ 354

Query: 316 GSSSTSETFNNPCLSRSREFEVKDVELWGFVNAS 349
           G +    TF +P LS++   + + +E WG V AS
Sbjct: 355 GQTFECTTFGSPSLSKTSRIQPEVIECWGIVQAS 388



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,451,900
Number of extensions: 367891
Number of successful extensions: 1180
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,364,969
Effective search space: 2241811692
Effective search space used: 2241811692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)