BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0742000 Os02g0742000|AK072328
(1671 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0742000 Bromo adjacent region domain containing protein 3012 0.0
Os02g0742100 Conserved hypothetical protein 894 0.0
Os01g0527400 Bromo adjacent region domain containing protein 81 8e-15
>Os02g0742000 Bromo adjacent region domain containing protein
Length = 1671
Score = 3012 bits (7809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1491/1658 (89%), Positives = 1491/1658 (89%)
Query: 14 KSRRLVRHMWPVTRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKKERV 73
KSRRLVRHMWPVTRVE HKKERV
Sbjct: 14 KSRRLVRHMWPVTRVEAAAPPPAQGQASPPPRSSVPPPLTTSYPPAPTTPPAAAHKKERV 73
Query: 74 DSPRPASSDSFLKDGREFRVGDCALFQAVEVPPFIGLIRWIEKKEEGFPKLRVSWLYRPA 133
DSPRPASSDSFLKDGREFRVGDCALFQAVEVPPFIGLIRWIEKKEEGFPKLRVSWLYRPA
Sbjct: 74 DSPRPASSDSFLKDGREFRVGDCALFQAVEVPPFIGLIRWIEKKEEGFPKLRVSWLYRPA 133
Query: 134 DIKLNKGTQLCAAPNEIFYSFHQDETSAVSLLHPCKVAFLRKGVELPAGISSFVCRRVYD 193
DIKLNKGTQLCAAPNEIFYSFHQDETSAVSLLHPCKVAFLRKGVELPAGISSFVCRRVYD
Sbjct: 134 DIKLNKGTQLCAAPNEIFYSFHQDETSAVSLLHPCKVAFLRKGVELPAGISSFVCRRVYD 193
Query: 194 IDNKCLWWLTDQDYINERQEEVNRLLHRTKLEMHAAVQSGGRSPKRLNGPSSAQQKSGSD 253
IDNKCLWWLTDQDYINERQEEVNRLLHRTKLEMHAAVQSGGRSPKRLNGPSSAQQKSGSD
Sbjct: 194 IDNKCLWWLTDQDYINERQEEVNRLLHRTKLEMHAAVQSGGRSPKRLNGPSSAQQKSGSD 253
Query: 254 GAQNCGLSKGKKRDRGEQGTDPAKRDRERPLKAEDGESGNFKVENLKSEITKITEKGGLP 313
GAQNCGLSKGKKRDRGEQGTDPAKRDRERPLKAEDGESGNFKVENLKSEITKITEKGGLP
Sbjct: 254 GAQNCGLSKGKKRDRGEQGTDPAKRDRERPLKAEDGESGNFKVENLKSEITKITEKGGLP 313
Query: 314 HAEAVEKLVHLMQLDRTERKIDLPGRVILADIIAATESPDCLGRFVQLRGLPVFDDWLQE 373
HAEAVEKLVHLMQLDRTERKIDLPGRVILADIIAATESPDCLGRFVQLRGLPVFDDWLQE
Sbjct: 314 HAEAVEKLVHLMQLDRTERKIDLPGRVILADIIAATESPDCLGRFVQLRGLPVFDDWLQE 373
Query: 374 AHKGKSGEAGSPKETDKPMEDXXXXXXXXXXXXPINLTALQSCSIGKSVNHLRSHKNPEI 433
AHKGKSGEAGSPKETDKPMED PINLTALQSCSIGKSVNHLRSHKNPEI
Sbjct: 374 AHKGKSGEAGSPKETDKPMEDLVLALLRALAKLPINLTALQSCSIGKSVNHLRSHKNPEI 433
Query: 434 QKKAKCLVENWKKRVDAEMKSNDVKPVVSGQAVSWPGKPGFPEIXXXXXXXXXXXXXXXX 493
QKKAKCLVENWKKRVDAEMKSNDVKPVVSGQAVSWPGKPGFPEI
Sbjct: 434 QKKAKCLVENWKKRVDAEMKSNDVKPVVSGQAVSWPGKPGFPEISSAGNRRSGSSESSLK 493
Query: 494 XXXXXXXXXXXLTSKPVAADAAAKSSPVISGSSKLQHMQPGNAVTNLKEQPSKSTGGTCG 553
LTSKPVAADAAAKSSPVISGSSKLQHMQPGNAVTNLKEQPSKSTGGTCG
Sbjct: 494 SPVSQLSSSKALTSKPVAADAAAKSSPVISGSSKLQHMQPGNAVTNLKEQPSKSTGGTCG 553
Query: 554 SELPAVKEEKXXXXXXXXXXXXXXXXEHAKTIGSSKEDARSSTAASGVAYKTSGSSSRVH 613
SELPAVKEEK EHAKTIGSSKEDARSSTAASGVAYKTSGSSSRVH
Sbjct: 554 SELPAVKEEKSSSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGVAYKTSGSSSRVH 613
Query: 614 RRTNNGLLGSGIQKEAAVARSSSLDHSSVQEKVSQSGTACEKGADIQSDQGNSHRLIVRF 673
RRTNNGLLGSGIQKEAAVARSSSLDHSSVQEKVSQSGTACEKGADIQSDQGNSHRLIVRF
Sbjct: 614 RRTNNGLLGSGIQKEAAVARSSSLDHSSVQEKVSQSGTACEKGADIQSDQGNSHRLIVRF 673
Query: 674 PNXXXXXXXXXXXXXFEDPSFTGSRASSPVADKHEQSDRRVKMKTENSNPHLGNDTNAES 733
PN FEDPSFTGSRASSPVADKHEQSDRRVKMKTENSNPHLGNDTNAES
Sbjct: 674 PNPGRSPARSASGGSFEDPSFTGSRASSPVADKHEQSDRRVKMKTENSNPHLGNDTNAES 733
Query: 734 WHSNDVKGASVSEEGDKSPRAMLTDDSKTTEGAGRDVPVSRVACSSYANEKGICSSETGL 793
WHSNDVKGASVSEEGDKSPRAMLTDDSKTTEGAGRDVPVSRVACSSYANEKGICSSETGL
Sbjct: 734 WHSNDVKGASVSEEGDKSPRAMLTDDSKTTEGAGRDVPVSRVACSSYANEKGICSSETGL 793
Query: 794 TKLFNPMNALIEIKYSEASHSLQAGDDTAMNLLASVAGXXXXXXXXXXXXXXXXXXANEQ 853
TKLFNPMNALIEIKYSEASHSLQAGDDTAMNLLASVAG ANEQ
Sbjct: 794 TKLFNPMNALIEIKYSEASHSLQAGDDTAMNLLASVAGEISKSELISSSPSPRNSSANEQ 853
Query: 854 GCEGDNIGKLKVECDVSLPQHAGPSNXXXXXXXXXXXXXXXGLVGKELHREDVNMLSVNN 913
GCEGDNIGKLKVECDVSLPQHAGPSN GLVGKELHREDVNMLSVNN
Sbjct: 854 GCEGDNIGKLKVECDVSLPQHAGPSNEVEKVISEKSEKSGVGLVGKELHREDVNMLSVNN 913
Query: 914 LLSQGDKGTTSAGSSPLPEIDSKAKTENREVEDTDKCSHPPSRGDDGVKSNAKQPIGFKI 973
LLSQGDKGTTSAGSSPLPEIDSKAKTENREVEDTDKCSHPPSRGDDGVKSNAKQPIGFKI
Sbjct: 914 LLSQGDKGTTSAGSSPLPEIDSKAKTENREVEDTDKCSHPPSRGDDGVKSNAKQPIGFKI 973
Query: 974 DTNSNIKSSTTSEYRSAFTVRGKVEDGCTTSSDVGSTLGDQCKLAVSNRKMLPAEEPLCG 1033
DTNSNIKSSTTSEYRSAFTVRGKVEDGCTTSSDVGSTLGDQCKLAVSNRKMLPAEEPLCG
Sbjct: 974 DTNSNIKSSTTSEYRSAFTVRGKVEDGCTTSSDVGSTLGDQCKLAVSNRKMLPAEEPLCG 1033
Query: 1034 GDKQAHGLLKPTDQKHLLGLPYYSEHIDKSGDSTANKLKLKPSFSSSTVEVNKADGLLVG 1093
GDKQAHGLLKPTDQKHLLGLPYYSEHIDKSGDSTANKLKLKPSFSSSTVEVNKADGLLVG
Sbjct: 1034 GDKQAHGLLKPTDQKHLLGLPYYSEHIDKSGDSTANKLKLKPSFSSSTVEVNKADGLLVG 1093
Query: 1094 SNTVLKEDEKKEHPADVTKLAVATGVKHGPENGIXXXXXXXXXXXXXXHTRPGGTVSQET 1153
SNTVLKEDEKKEHPADVTKLAVATGVKHGPENGI HTRPGGTVSQET
Sbjct: 1094 SNTVLKEDEKKEHPADVTKLAVATGVKHGPENGISSKESKDNSSESSSHTRPGGTVSQET 1153
Query: 1154 EHSAQRXXXXXXXXXXXXXXLVSSDDGSSFSAKTRSNATAKLDFDLNEGIPGDEGHLSEP 1213
EHSAQR LVSSDDGSSFSAKTRSNATAKLDFDLNEGIPGDEGHLSEP
Sbjct: 1154 EHSAQRSSKKSSDDAGGKDDLVSSDDGSSFSAKTRSNATAKLDFDLNEGIPGDEGHLSEP 1213
Query: 1214 ATSPAVCSSAIHLPRPSPFVSPISSGLPAPIAAPAKGPFVPPENLIRLKSETGWKGSAAT 1273
ATSPAVCSSAIHLPRPSPFVSPISSGLPAPIAAPAKGPFVPPENLIRLKSETGWKGSAAT
Sbjct: 1214 ATSPAVCSSAIHLPRPSPFVSPISSGLPAPIAAPAKGPFVPPENLIRLKSETGWKGSAAT 1273
Query: 1274 SAFRPAEPRKIFEMTLSASGILVSDAAGKNRPALDIDLNVADEQFLEEDVSQSSVQTTGS 1333
SAFRPAEPRKIFEMTLSASGILVSDAAGKNRPALDIDLNVADEQFLEEDVSQSSVQTTGS
Sbjct: 1274 SAFRPAEPRKIFEMTLSASGILVSDAAGKNRPALDIDLNVADEQFLEEDVSQSSVQTTGS 1333
Query: 1334 ESGNTRRSNGPVRSVGFELDLNRADEVAENGQIVSNTNHRVEVPLLSRPLPGVFSSSDAN 1393
ESGNTRRSNGPVRSVGFELDLNRADEVAENGQIVSNTNHRVEVPLLSRPLPGVFSSSDAN
Sbjct: 1334 ESGNTRRSNGPVRSVGFELDLNRADEVAENGQIVSNTNHRVEVPLLSRPLPGVFSSSDAN 1393
Query: 1394 SSRDFDLNNGPTLDEAGTEHAPRSLSSKNTSSIPFLPQVASMRMNSAEMSNISPWFASAN 1453
SSRDFDLNNGPTLDEAGTEHAPRSLSSKNTSSIPFLPQVASMRMNSAEMSNISPWFASAN
Sbjct: 1394 SSRDFDLNNGPTLDEAGTEHAPRSLSSKNTSSIPFLPQVASMRMNSAEMSNISPWFASAN 1453
Query: 1454 ACAPVAIKSFLPSRGEQPHPVETAAGSGTQRIITSMADGVQHGSDPSRTPVISTSPTMMF 1513
ACAPVAIKSFLPSRGEQPHPVETAAGSGTQRIITSMADGVQHGSDPSRTPVISTSPTMMF
Sbjct: 1454 ACAPVAIKSFLPSRGEQPHPVETAAGSGTQRIITSMADGVQHGSDPSRTPVISTSPTMMF 1513
Query: 1514 HPPAYQYAGFPFTPSVHLQAPGFSIGSTSYANSAPGGIPYFPTIAPTLVGPAGALPAQHT 1573
HPPAYQYAGFPFTPSVHLQAPGFSIGSTSYANSAPGGIPYFPTIAPTLVGPAGALPAQHT
Sbjct: 1514 HPPAYQYAGFPFTPSVHLQAPGFSIGSTSYANSAPGGIPYFPTIAPTLVGPAGALPAQHT 1573
Query: 1574 RQYAINLPEGSSTVGHDNNRKWGRQGLDLNSGPGSVDVEVKDDRVTLPVRQNFIAPPHAF 1633
RQYAINLPEGSSTVGHDNNRKWGRQGLDLNSGPGSVDVEVKDDRVTLPVRQNFIAPPHAF
Sbjct: 1574 RQYAINLPEGSSTVGHDNNRKWGRQGLDLNSGPGSVDVEVKDDRVTLPVRQNFIAPPHAF 1633
Query: 1634 VDEHTRMYQMPPGVGIKRKEPEGSWDAERSSYKQLSWQ 1671
VDEHTRMYQMPPGVGIKRKEPEGSWDAERSSYKQLSWQ
Sbjct: 1634 VDEHTRMYQMPPGVGIKRKEPEGSWDAERSSYKQLSWQ 1671
>Os02g0742100 Conserved hypothetical protein
Length = 553
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/553 (81%), Positives = 478/553 (86%), Gaps = 5/553 (0%)
Query: 1122 GPENGIXXXXXXXXXXXXXXHTRPGGTVSQETEHSAQRXXXXXXXXXXXXXXLVSSDDGS 1181
GPENGI H RPG TVSQ+TE SA+R LVSSDDGS
Sbjct: 3 GPENGISSKELKDNSSESSSHARPGTTVSQDTERSARRSSKKSSDDASGNEDLVSSDDGS 62
Query: 1182 SFSAKTRSNATAKLDFDLNEGIPGDEGHLSEPATSPAVCSSAIHLPRPSPFVSPISSGLP 1241
SF+AK R +ATAKLDFDLNEGIPGD+ H SE TSPAVCSSAI+LP SPF+SP+SSGLP
Sbjct: 63 SFAAKIRPSATAKLDFDLNEGIPGDDVHQSEAETSPAVCSSAINLPCLSPFISPMSSGLP 122
Query: 1242 API--AAPAKGPFVPPENLIRLKSETGWKGSAATSAFRPAEPRKIFEMTLSASGILVSDA 1299
API AA AKGPFVPPENL+R + ETGWKGSAATSAFRPAEPRKIFEMTLSA GI VSDA
Sbjct: 123 APIKVAATAKGPFVPPENLLRFQPETGWKGSAATSAFRPAEPRKIFEMTLSAPGIPVSDA 182
Query: 1300 AGKNRPALDIDLNVADEQFLEEDVSQSSVQTTGSESGNTRRSNGPVRSVGFELDLNRADE 1359
A K+RPALDIDLNVADEQFLEED+SQSSVQTTGSESGNTRRSNGPVRSVG ELDLNRADE
Sbjct: 183 ADKHRPALDIDLNVADEQFLEEDISQSSVQTTGSESGNTRRSNGPVRSVGIELDLNRADE 242
Query: 1360 VAENGQIVSNTNHRVEVPLLS-RPLPGVFSSSDANSSRDFDLNNGPTLDEAGTEHAPRSL 1418
VAEN VSNT HRVEVPLLS RPLP +FSS+D N SRDFDLNNGPTLDE GTEHA RSL
Sbjct: 243 VAEN-HFVSNTPHRVEVPLLSSRPLPAIFSSADTNGSRDFDLNNGPTLDETGTEHAARSL 301
Query: 1419 SSKNTSSIPFLPQVASMRMNSAEMSNISPWFASANACAPVAIKSFLPSRGEQPHPVETAA 1478
SSKNTSSIPF+PQVA RMNSAEMSNISPWFASA+ APVA + FLPSRGEQPHPVETAA
Sbjct: 302 SSKNTSSIPFIPQVAGGRMNSAEMSNISPWFASAHPYAPVAAQPFLPSRGEQPHPVETAA 361
Query: 1479 GSGTQRIITSMADGVQHGSDPSRTPVISTSPTMMFHPPAYQYAGFPFTPSVHLQAPGFSI 1538
GSGTQRIITS+ADGVQ GSDP R PVISTSPTM+FHPPAYQYAGFPFTP VHLQAPGFSI
Sbjct: 362 GSGTQRIITSLADGVQRGSDPCRAPVISTSPTMVFHPPAYQYAGFPFTPGVHLQAPGFSI 421
Query: 1539 GSTSYANSAPGGIPYFPTIAPTLVGPAGALPAQHTRQYAINLPEGSSTVGHDNNRKWGRQ 1598
GSTSYANSAP G+PYFP+IAPTL+GPAGALPAQHTRQYAINLPEGSSTVGHD+NRKWGRQ
Sbjct: 422 GSTSYANSAPAGVPYFPSIAPTLLGPAGALPAQHTRQYAINLPEGSSTVGHDSNRKWGRQ 481
Query: 1599 GLDLNSGPGSVDVEVKDDRVTLPVRQNFIAPPHAFVDEHTRMYQMPPGVGIKRKEPEGSW 1658
GLDLNSGPGSVD E+KD+RV+LPVRQN I PPHAF +EHTRMYQM P VGIKRKEPEGSW
Sbjct: 482 GLDLNSGPGSVDAEIKDERVSLPVRQNLITPPHAFGEEHTRMYQM-PSVGIKRKEPEGSW 540
Query: 1659 DAERSSYKQLSWQ 1671
DAERSSYKQLSWQ
Sbjct: 541 DAERSSYKQLSWQ 553
>Os01g0527400 Bromo adjacent region domain containing protein
Length = 644
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 83 SFLKDGREFRVGDCALF--QAVEVPPFIGLIRWIEKKEEGFPKLRVSWLYRPADI-KLNK 139
SF +G F + D L + + P++ +++ I + E G + W YRP + K
Sbjct: 159 SFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETE-GSLSVTGQWFYRPEEADKKGG 217
Query: 140 GTQLCAAPNEIFYSFHQDETSAVSLLHPCKVAFLRKGVELPAGIS--SFVCRRVYDIDNK 197
G+ + E+FYSFH D+ A S++H C V F+ + ++P+ F+ ++VYD K
Sbjct: 218 GSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKIPSRKEHPGFIVQKVYDTVAK 277
Query: 198 CLWWLTDQDYINERQEEVNRLLHRT 222
LW LTD+DY + +Q E++ L+ +T
Sbjct: 278 KLWNLTDKDYEDNKQHEIDLLVKKT 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 55,475,279
Number of extensions: 2460633
Number of successful extensions: 6943
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 6933
Number of HSP's successfully gapped: 3
Length of query: 1671
Length of database: 17,035,801
Length adjustment: 114
Effective length of query: 1557
Effective length of database: 11,083,405
Effective search space: 17256861585
Effective search space used: 17256861585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 163 (67.4 bits)