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Os02g0742000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromo adjacent region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0142) R2 : 0.538
β1 : 0.739 (0.052) R2dD : 0.213 R2D : 0.187
β2 : 0.656 (0.037) R2dC : 0.319 R2C : 0.326
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.127 (0.0303) R2dN8 : 0.0237 R2N8 : -0.00264
σ : 0.267
deviance : 32.5
__
_____
C
peak time of C : 5.61
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.58 0.26 12.5 0.711 0.758 -0.282 0.24 -0.241 0.123 3.9 0.01424 37 -- --
30.77 0.26 12.5 0.719 0.705 -0.256 0.0453 -- 0.107 3.95 0.01424 37 -- --
30.7 0.26 12.5 0.722 0.705 -0.254 -- -0.108 0.108 3.96 0.01424 37 -- --
30.78 0.26 12.5 0.718 0.705 -0.257 -- -- 0.107 3.94 0.01424 37 -- --
42.89 0.305 12.5 0.606 -- 0.469 -- -0.321 0.228 -- 75.48 710 -- --
32.47 0.267 12.5 0.739 0.656 -- 0.105 -- 0.127 5.62 -- -- -- --
32.5 0.267 12.5 0.739 0.656 -- -- -- 0.127 5.61 -- -- -- --
32.04 0.264 12.6 0.713 -- 0.806 -- -- 0.142 -- 1.646 723 -- --
44.27 0.312 12.6 -- 0.748 -0.317 -- -- 0.0225 3.59 0.01424 37 -- --
54.87 0.346 12.5 0.761 -- -- -- -- 0.143 -- -- -- -- --
46.9 0.32 12.6 -- 0.668 -- -- -- 0.0444 5.56 -- -- -- --
48.42 0.324 12.6 -- -- 0.765 -- -- 0.0781 -- 2.429 695 -- --
70.13 0.391 12.6 -- -- -- -- -- 0.0582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.47 temperature 20.0 270 > th dose dependent rect. 22 3
2 28.47 temperature 15.0 90 > th dose dependent rect. 19 9
4 28.56 atmosphere 1015.0 270 < th dose independent rect. 6 21
5 28.66 temperature 10.0 270 > th dose dependent rect. 17 9
7 28.70 precipitation 0.1 270 < th dose independent rect. 3 3
8 28.70 precipitation 0.1 270 < th dose dependent rect. 3 3
9 28.72 temperature 20.0 270 > th dose dependent rect. 20 6
10 28.73 wind 9.0 270 < th dose independent rect. 6 21
11 28.74 temperature 30.0 270 < th dose dependent rect. 3 2
15 28.76 atmosphere 1015.0 90 < th dose independent rect. 8 20
19 28.79 wind 7.0 270 < th dose independent rect. 3 3
21 28.79 temperature 10.0 270 > th dose independent rect. 3 3
23 28.79 temperature 30.0 270 < th dose independent rect. 3 3
24 28.79 humidity 50.0 270 > th dose independent rect. 3 3
27 28.79 atmosphere 995.0 270 > th dose independent rect. 3 3
28 28.79 atmosphere 1015.0 270 < th dose independent rect. 3 3
29 28.79 radiation 20.0 270 < th dose independent rect. 3 3
32 28.79 temperature 10.0 270 > th dose independent rect. 6 21
35 28.80 radiation 30.0 270 < th dose dependent rect. 3 3
37 28.81 radiation 1.0 270 < th dose independent rect. 3 3
40 28.82 humidity 50.0 270 > th dose dependent rect. 3 3
41 28.82 radiation 1.0 270 < th dose dependent rect. 3 3
48 28.86 radiation 30.0 270 < th dose independent rect. 15 11
50 28.86 wind 9.0 270 < th dose dependent rect. 3 3
53 28.87 atmosphere 1015.0 270 < th dose dependent rect. 3 2
56 28.91 wind 7.0 90 < th dose independent rect. 8 20
59 28.93 precipitation 0.1 270 < th dose independent rect. 6 21
61 28.93 precipitation 0.1 270 < th dose dependent rect. 6 21
72 28.95 radiation 40.0 270 < th dose dependent rect. 15 11
77 28.96 wind 9.0 90 < th dose dependent rect. 8 20
78 28.97 temperature 20.0 90 > th dose independent rect. 8 20
83 28.99 wind 9.0 1440 < th dose independent rect. 5 5
109 29.03 atmosphere 995.0 90 > th dose independent rect. 8 20
147 29.09 temperature 10.0 90 > th dose independent rect. 8 20
149 29.09 atmosphere 1015.0 270 < th dose dependent rect. 9 1
152 29.09 wind 9.0 270 < th dose dependent rect. 16 10
179 29.11 wind 9.0 270 < th dose dependent rect. 6 21
186 29.13 atmosphere 1015.0 270 < th dose dependent rect. 7 4
210 29.15 temperature 10.0 1440 > th dose independent rect. 5 5
213 29.15 atmosphere 995.0 1440 > th dose independent rect. 5 5
214 29.15 atmosphere 1015.0 1440 < th dose independent rect. 5 5
215 29.15 temperature 10.0 1440 > th dose independent rect. 10 19
226 29.15 atmosphere 1015.0 30 < th dose dependent rect. 9 3
228 29.15 temperature 10.0 270 > th dose dependent rect. 21 14
254 29.18 temperature 25.0 270 < th dose independent rect. 16 14
260 29.18 temperature 10.0 30 > th dose dependent rect. 24 12
262 29.19 atmosphere 995.0 270 > th dose independent rect. 6 21
279 29.22 temperature 20.0 270 > th dose independent rect. 22 3
280 29.22 temperature 30.0 90 < th dose independent rect. 17 11
282 29.22 precipitation 0.1 90 < th dose independent rect. 8 20
288 29.22 precipitation 0.1 90 < th dose dependent rect. 8 20
352 29.30 temperature 20.0 90 > th dose independent rect. 19 9
359 29.30 temperature 10.0 90 > th dose dependent rect. 8 20
368 29.31 temperature 15.0 30 > th dose dependent rect. 22 14
407 29.34 humidity 50.0 1440 > th dose independent rect. 5 4
425 29.35 wind 7.0 270 < th dose independent rect. 16 10
488 29.40 precipitation 0.1 270 < th dose independent rect. 2 14
493 29.40 humidity 50.0 270 > th dose independent rect. 6 21
499 29.40 precipitation 0.1 270 < th dose dependent rect. 2 14
554 29.44 temperature 25.0 270 > th dose independent sin 11 NA
617 29.47 atmosphere 1010.0 90 < th dose independent rect. 19 9
632 29.48 atmosphere 1015.0 270 < th dose independent rect. 22 14
634 29.48 radiation 1.0 30 > th dose independent rect. 12 21
636 29.48 temperature 10.0 270 > th dose dependent rect. 3 3
645 29.48 radiation 1.0 90 < th dose dependent rect. 7 21
649 29.49 precipitation 0.1 270 < th dose independent rect. 16 10
658 29.49 precipitation 0.1 270 < th dose dependent rect. 16 10
666 29.50 radiation 1.0 90 < th dose independent rect. 7 21
682 29.51 atmosphere 1015.0 270 < th dose independent rect. 17 9
703 29.52 wind 5.0 90 < th dose independent rect. 19 9
722 29.53 humidity 60.0 90 > th dose independent rect. 18 10
740 29.54 atmosphere 1005.0 90 > th dose independent rect. 24 3
771 29.55 radiation 1.0 90 < th dose dependent rect. 11 17
776 29.56 temperature 20.0 30 > th dose independent rect. 22 6
780 29.56 temperature 10.0 270 > th dose independent rect. 16 10
782 29.56 temperature 10.0 270 > th dose independent rect. 2 14
783 29.56 atmosphere 1015.0 270 < th dose independent rect. 2 14
788 29.56 wind 1.0 30 < th dose dependent rect. 22 5
796 29.56 radiation 1.0 90 < th dose dependent rect. 17 11
799 29.56 radiation 1.0 90 < th dose dependent rect. 13 15
810 29.57 radiation 1.0 90 < th dose independent rect. 9 19
828 29.57 radiation 1.0 90 < th dose dependent rect. 15 13
839 29.58 radiation 1.0 90 < th dose independent rect. 11 17
844 29.58 humidity 50.0 30 > th dose independent rect. 9 19
856 29.58 temperature 25.0 720 > th dose dependent rect. 16 9
859 29.58 temperature 25.0 720 > th dose dependent rect. 16 11
862 29.58 temperature 30.0 270 < th dose dependent rect. 17 13
873 29.59 radiation 1.0 90 < th dose independent rect. 13 15
885 29.60 wind 1.0 270 > th dose independent rect. 3 2
925 29.61 temperature 25.0 270 > th dose independent rect. 18 14
943 29.61 temperature 20.0 30 > th dose dependent rect. 20 16