FiT-DB / Search/ Help/ Sample detail

Os01g0527400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromo adjacent region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.45 (0.0228) R2 : 0.292
β1 : 1.15 (0.0835) R2dD : 0.303 R2D : 0.275
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.0487) R2dN8 : 0.0177 R2N8 : -0.0108
σ : 0.428
deviance : 83.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.83 0.366 6.49 0.855 0.543 0.482 0.0469 -0.594 0.0198 14.1 20.06 871 -- --
60.33 0.362 6.48 0.855 0.529 0.66 0.0489 -- 0.0299 14.4 19.57 2459 -- --
60.84 0.363 6.49 0.855 0.543 0.481 -- -0.604 0.0195 14.1 20.07 875 -- --
60.18 0.361 6.47 0.824 0.538 0.719 -- -- 0.0191 14.4 19.3 2437 -- --
75.61 0.405 6.5 0.794 -- 0.542 -- -0.62 -0.0191 -- 19.5 1898 -- --
69.36 0.39 6.45 1.16 0.492 -- 0.246 -- 0.153 14.5 -- -- -- --
69.58 0.391 6.45 1.17 0.493 -- -- -- 0.154 14.5 -- -- -- --
75.88 0.406 6.48 0.862 -- 0.722 -- -- 0.0136 -- 19.24 1899 -- --
68.81 0.386 6.5 -- 0.548 1.05 -- -- -0.111 14.8 19.09 13954 -- --
83.88 0.428 6.45 1.15 -- -- -- -- 0.142 -- -- -- -- --
105.46 0.48 6.48 -- 0.471 -- -- -- 0.0245 14.5 -- -- -- --
80.27 0.417 6.53 -- -- 1.04 -- -- -0.208 -- 17.74 47520 -- --
118.51 0.508 6.48 -- -- -- -- -- 0.015 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.69 humidity 90 14400 < th dose independent rect. 6 1
2 58.79 radiation 1 1440 > th dose independent rect. 12 2
3 58.89 humidity 60 14400 > th dose dependent rect. 6 1
7 59.00 radiation 1 1440 > th dose independent rect. 10 4
8 59.04 temperature 20 720 > th dose independent rect. 22 17
12 59.07 radiation 1 1440 > th dose independent rect. 8 6
18 59.27 temperature 20 720 > th dose independent rect. 22 9
19 59.30 humidity 90 14400 > th dose independent rect. 6 1
27 59.40 wind 9 14400 < th dose independent rect. 5 3
28 59.40 temperature 20 720 < th dose independent rect. 22 20
41 59.54 humidity 90 14400 > th dose dependent rect. 6 9
42 59.58 temperature 20 720 > th dose independent rect. 3 4
44 59.58 wind 1 43200 < th dose dependent rect. 6 5
46 59.60 radiation 1 1440 < th dose independent rect. 8 6
47 59.60 radiation 1 1440 < th dose dependent rect. 8 6
51 59.62 wind 1 43200 > th dose independent rect. 5 7
60 59.67 temperature 20 720 < th dose independent rect. 24 5
61 59.67 radiation 10 4320 < th dose independent rect. 24 5
68 59.69 wind 1 43200 < th dose dependent rect. 5 9
72 59.71 wind 1 43200 < th dose independent rect. 3 21
73 59.71 wind 1 43200 < th dose dependent rect. 4 19
76 59.73 radiation 1 1440 < th dose independent rect. 11 1
77 59.73 wind 1 43200 > th dose independent rect. 4 11
80 59.73 temperature 20 720 > th dose independent rect. 19 20
81 59.73 radiation 1 1440 < th dose dependent rect. 11 1
87 59.76 wind 1 43200 < th dose independent rect. 22 19
94 59.77 humidity 60 14400 > th dose dependent rect. 5 3
102 59.79 wind 1 43200 > th dose independent sin 4 NA
103 59.79 radiation 1 1440 < th dose independent rect. 13 1
105 59.79 radiation 1 1440 < th dose dependent rect. 13 1
107 59.79 wind 1 43200 < th dose dependent rect. 4 14
113 59.81 wind 1 43200 < th dose independent rect. 4 11
123 59.83 wind 1 43200 < th dose independent rect. 23 17
127 59.85 temperature 20 720 < th dose independent rect. 22 13
159 59.92 temperature 20 720 < th dose independent rect. 23 9
167 59.93 wind 1 43200 > th dose independent rect. 22 19
179 59.95 wind 1 43200 > th dose independent rect. 23 17
181 59.95 wind 1 43200 > th dose independent rect. 13 22
190 59.97 humidity 90 14400 < th dose independent rect. 11 1
191 59.97 wind 1 43200 > th dose independent rect. 22 21
196 59.98 wind 1 43200 > th dose independent rect. 23 15
204 59.99 wind 1 43200 < th dose independent rect. 16 22
206 59.99 wind 1 43200 < th dose dependent sin 2 NA
209 60.00 temperature 20 720 < th dose independent sin 7 NA
210 60.00 humidity 90 14400 > th dose independent rect. 11 1
221 60.01 wind 1 43200 < th dose independent no NA NA
228 60.01 wind 1 43200 < th dose independent rect. 13 23
233 60.03 temperature 20 720 < th dose independent rect. 3 1
250 60.06 temperature 20 720 > th dose independent sin 8 NA
266 60.08 wind 1 43200 > th dose independent rect. 2 22
267 60.08 wind 1 43200 < th dose independent rect. 10 23
277 60.09 temperature 20 720 > th dose independent rect. 12 19
290 60.10 temperature 20 720 > th dose independent rect. 19 12
299 60.11 wind 1 43200 > th dose independent rect. 6 4
301 60.11 wind 3 43200 < th dose dependent rect. 5 2
309 60.12 temperature 20 720 > th dose independent rect. 2 14
320 60.13 humidity 90 14400 < th dose independent rect. 6 10
325 60.13 temperature 20 720 > th dose independent rect. 12 21
345 60.16 wind 1 43200 < th dose independent sin 3 NA
350 60.16 temperature 15 270 > th dose dependent rect. 3 6
355 60.17 humidity 90 14400 > th dose dependent rect. 11 1
358 60.18 humidity 90 14400 > th dose independent rect. 6 10
368 60.18 temperature 15 720 > th dose dependent rect. 3 4
393 60.21 temperature 20 720 > th dose independent rect. 19 14
439 60.28 wind 1 1440 > th dose independent rect. 23 1
458 60.29 wind 1 43200 > th dose independent rect. 18 23
465 60.30 humidity 90 14400 > th dose dependent rect. 9 6
476 60.31 humidity 50 43200 > th dose dependent rect. 2 1
482 60.32 temperature 30 270 < th dose dependent rect. 7 6
508 60.35 wind 1 43200 > th dose independent no NA NA
513 60.35 wind 1 43200 > th dose independent rect. 4 23
515 60.35 humidity 90 14400 > th dose dependent rect. 11 4
518 60.35 humidity 70 43200 > th dose dependent rect. 20 10
530 60.37 wind 1 43200 > th dose independent rect. 3 18
541 60.38 temperature 30 270 < th dose dependent rect. 9 2
551 60.39 humidity 70 43200 > th dose dependent rect. 21 6
555 60.40 humidity 90 14400 < th dose independent rect. 11 5
561 60.40 humidity 70 43200 > th dose dependent rect. 21 4
567 60.40 atmosphere 995 43200 < th dose dependent rect. 12 14
576 60.41 wind 7 43200 > th dose dependent rect. 18 2
584 60.42 humidity 90 14400 < th dose independent rect. 15 1
588 60.42 humidity 70 43200 > th dose dependent rect. 23 8
592 60.42 atmosphere 995 43200 < th dose dependent rect. 11 16
605 60.44 temperature 20 4320 > th dose independent rect. 19 1
617 60.45 humidity 90 14400 > th dose independent rect. 10 6
625 60.45 humidity 80 43200 > th dose dependent rect. 1 5
627 60.45 radiation 30 14400 < th dose dependent rect. 24 5
763 60.50 atmosphere 995 43200 < th dose dependent rect. 11 21
764 60.51 humidity 90 43200 < th dose independent rect. 3 3
766 60.51 atmosphere 1005 720 < th dose independent rect. 20 4
777 60.51 humidity 70 43200 > th dose dependent sin 11 NA
852 60.54 wind 1 14400 < th dose independent rect. 23 3
896 60.56 radiation 10 4320 < th dose independent rect. 21 8
976 60.60 temperature 20 4320 < th dose independent rect. 19 1