BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0527400 Os01g0527400|AK103167
         (644 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0527400  Bromo adjacent region domain containing protein    1059   0.0  
Os02g0742000  Bromo adjacent region domain containing protein      81   3e-15

>Os01g0527400 Bromo adjacent region domain containing protein
          Length = 644

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/507 (100%), Positives = 507/507 (100%)

Query: 138 VPIGEPVKITGRGKKQRKHYTSFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETEG 197
           VPIGEPVKITGRGKKQRKHYTSFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETEG
Sbjct: 138 VPIGEPVKITGRGKKQRKHYTSFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETEG 197

Query: 198 SLSVTGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKI 257
           SLSVTGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKI
Sbjct: 198 SLSVTGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKI 257

Query: 258 PSRKEHPGFIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRIGQLSDIEPADA 317
           PSRKEHPGFIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRIGQLSDIEPADA
Sbjct: 258 PSRKEHPGFIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRIGQLSDIEPADA 317

Query: 318 PGDNNDQLSNKRGLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYATLVKYKAV 377
           PGDNNDQLSNKRGLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYATLVKYKAV
Sbjct: 318 PGDNNDQLSNKRGLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYATLVKYKAV 377

Query: 378 TGDQYRDRWLDKLVDTIPLTSKESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVS 437
           TGDQYRDRWLDKLVDTIPLTSKESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVS
Sbjct: 378 TGDQYRDRWLDKLVDTIPLTSKESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVS 437

Query: 438 IMASLERSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELK 497
           IMASLERSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELK
Sbjct: 438 IMASLERSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELK 497

Query: 498 VGLTAAERTSEPEESRKLQMTDARCVRCAEKEVGVSDIIHAGHGDRYQLECNACGHSWFS 557
           VGLTAAERTSEPEESRKLQMTDARCVRCAEKEVGVSDIIHAGHGDRYQLECNACGHSWFS
Sbjct: 498 VGLTAAERTSEPEESRKLQMTDARCVRCAEKEVGVSDIIHAGHGDRYQLECNACGHSWFS 557

Query: 558 SRDAITTLTVDTPTSAGGSVGTAPWATAKFDVMEKQLTSPRDHQPDKPLADALHKSAAPY 617
           SRDAITTLTVDTPTSAGGSVGTAPWATAKFDVMEKQLTSPRDHQPDKPLADALHKSAAPY
Sbjct: 558 SRDAITTLTVDTPTSAGGSVGTAPWATAKFDVMEKQLTSPRDHQPDKPLADALHKSAAPY 617

Query: 618 MPTLEKQKSFGKHKPDEPSSAPAAGHE 644
           MPTLEKQKSFGKHKPDEPSSAPAAGHE
Sbjct: 618 MPTLEKQKSFGKHKPDEPSSAPAAGHE 644



>Os02g0742000 Bromo adjacent region domain containing protein
          Length = 1671

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 6/145 (4%)

Query: 159 SFEYEGNTFELEDPVLLTPEDSKEKPYVAILKDITETE-GSLSVTGQWFYRPEEADKKGG 217
           SF  +G  F + D  L   +  +  P++ +++ I + E G   +   W YRP +  K   
Sbjct: 83  SFLKDGREFRVGDCALF--QAVEVPPFIGLIRWIEKKEEGFPKLRVSWLYRPADI-KLNK 139

Query: 218 GSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKIPSRKEHPGFIVQKVYDTVAK 277
           G+   +   E+FYSFH D+  A S++H C V F+ +  ++P+      F+ ++VYD   K
Sbjct: 140 GTQLCAAPNEIFYSFHQDETSAVSLLHPCKVAFLRKGVELPAGIS--SFVCRRVYDIDNK 197

Query: 278 KLWNLTDKDYEDNKQHEIDLLVKKT 302
            LW LTD+DY + +Q E++ L+ +T
Sbjct: 198 CLWWLTDQDYINERQEEVNRLLHRT 222



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,516,285
Number of extensions: 838583
Number of successful extensions: 1687
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1691
Number of HSP's successfully gapped: 2
Length of query: 644
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 537
Effective length of database: 11,448,903
Effective search space: 6148060911
Effective search space used: 6148060911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)