BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0740700 Os02g0740700|AK065964
(372 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0740700 Peptidase M10A and M12B, matrixin and adamalys... 675 0.0
Os06g0239100 Peptidase M10A and M12B, matrixin and adamalys... 430 e-121
Os10g0557900 Peptidase M10A and M12B, matrixin and adamalys... 248 4e-66
Os10g0558150 144 1e-34
Os10g0558100 127 2e-29
>Os02g0740700 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 372
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/360 (93%), Positives = 337/360 (93%)
Query: 1 MGASTSPRXXXXXXXXXXXXXXXSPAMAFPMGLPATANPFPNPWSAFQNLSGCHAGEERE 60
MGASTSPR SPAMAFPMGLPATANPFPNPWSAFQNLSGCHAGEERE
Sbjct: 1 MGASTSPRLALLVVVAAAAFVFVSPAMAFPMGLPATANPFPNPWSAFQNLSGCHAGEERE 60
Query: 61 GLGRLKDYLSHFGYLXXXXXXXXYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMV 120
GLGRLKDYLSHFGYL YSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMV
Sbjct: 61 GLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMV 120
Query: 121 APRCGVADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSID 180
APRCGVADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSID
Sbjct: 121 APRCGVADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSID 180
Query: 181 RATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAF 240
RATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAF
Sbjct: 181 RATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAF 240
Query: 241 SPTDGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPT 300
SPTDGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPT
Sbjct: 241 SPTDGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPT 300
Query: 301 IRTGTRKVDLESDDVLGIQSLYGTNPNFKGVTPTSPSTSSREMDGSAAAAGIRPWSGFVG 360
IRTGTRKVDLESDDVLGIQSLYGTNPNFKGVTPTSPSTSSREMDGSAAAAGIRPWSGFVG
Sbjct: 301 IRTGTRKVDLESDDVLGIQSLYGTNPNFKGVTPTSPSTSSREMDGSAAAAGIRPWSGFVG 360
>Os06g0239100 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 371
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 254/334 (76%), Gaps = 10/334 (2%)
Query: 25 PAMAFPMGLPATANPFPNPWSAFQNLSGCHAGEEREGLGRLKDYLSHFGYLXXXXXXXX- 83
PA A P GLP + NPWSAF+NLSGCH G+ER+GLG+LKDYL HFGYL
Sbjct: 26 PAFALPAGLPDIKS-LTNPWSAFKNLSGCHFGDERQGLGKLKDYLWHFGYLSYPSSSSLS 84
Query: 84 --YSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGVADVINGTSTMDRNSS 141
++D FD +E AI YQ NFGL+ TG+LD TV QM+APRCGVADV+NGTSTM
Sbjct: 85 PSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPRCGVADVVNGTSTMGGGGG 144
Query: 142 AAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSAVFARAFSRWAAATRL 201
R LYSYFPG P WP R LRYAITATS TSIDRATLS VFA AF+RW+AAT L
Sbjct: 145 VRG---RGLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSKVFASAFARWSAATTL 201
Query: 202 QFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGDV 261
FTE +SA++ADITIGFY GDHGDGEAFDGPLGTLAHAFSPT+GR HLDA+EAWVA GDV
Sbjct: 202 NFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGDV 261
Query: 262 STSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSL 321
+ +SS AVDLESVAVHEIGH+LGLGHSS DSIM+PT+ + T+KV+L +DDV GIQ L
Sbjct: 262 TRASS-NAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGL 320
Query: 322 YGTNPNFKGVTPTSPSTSSREMDGSAAAAGIRPW 355
YG NPNFKGVTP P+TSSREMD + A RPW
Sbjct: 321 YGNNPNFKGVTP--PATSSREMDSAGAGELSRPW 352
>Os10g0557900 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 355
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/331 (43%), Positives = 189/331 (57%), Gaps = 26/331 (7%)
Query: 31 MGLPATANPFPNPWSAFQNLSGCHAGEEREGLGRLKDYLSHFGYLXXXXXXXXYSDAFDD 90
+GLP W +F+ L G GL LK YL+ FGY+ +DAFD+
Sbjct: 23 LGLPVVHGHGGVAWHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDT--TDAFDE 80
Query: 91 SLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGVADVINGTSTMDRNSSAAALRGRH- 149
LE A+ YQ F L TG LD T+DQ+++PRCGV D ++R S A G
Sbjct: 81 HLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGD-----DDVERPVSVALSPGAQG 135
Query: 150 ----LYSYFPGGPMW----PPFRRNLRYAITATSATS-IDRATLSAVFARAFSRWAAATR 200
+++F G P W PP L YA++ T+ + A + AVF RAF+RWA
Sbjct: 136 GVVSRFTFFKGEPRWTRSDPPI--VLSYAVSPTATVGYLPPAAVRAVFQRAFARWARTIP 193
Query: 201 LQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGD 260
+ F E ADI +GFY+G+HGDG FDGPLG L HAFSP +GR HLDA+E W D
Sbjct: 194 VGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFD 253
Query: 261 VSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQS 320
V ++S A+DLESVA HEIGH+LGLGHS+ P ++MYP+I+ +KV L DDV G+Q+
Sbjct: 254 VDATAS---AIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQA 310
Query: 321 LYGTNPNFKGVTPTSPSTSS----REMDGSA 347
LYG+NP F + + TSS R + GSA
Sbjct: 311 LYGSNPQFSLSSLSEQGTSSSSPRRLLAGSA 341
>Os10g0558150
Length = 261
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 111/187 (59%), Gaps = 12/187 (6%)
Query: 151 YSYFPGGPMWPPFRRN--LRYAITATSATS-IDRATLSAVFARAFSRWAAATRLQFTEVS 207
Y+++ G P W R L YA++ T A + + AVF AF+RWA + F E++
Sbjct: 48 YAFWTGKPRWTRHGRPMVLTYAVSHTDAVGYLPGDAVLAVFRSAFARWAEVIPVSFAEIT 107
Query: 208 SASNAD-----ITIGFY-SGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGDV 261
+ +A I +GFY +G+HGDG FDGPL AHA P DGR DAAE W D+
Sbjct: 108 TEDDAAAAEADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAV--DL 165
Query: 262 STSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSL 321
+ +S AVDLE+VA HEIGH LGL HS+ S+MYP + T RKV L DDV GIQ L
Sbjct: 166 AADAS-PAAVDLETVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQEL 224
Query: 322 YGTNPNF 328
YG NP+F
Sbjct: 225 YGVNPSF 231
>Os10g0558100
Length = 624
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 151 YSYFPGGPMWPPFRRNLRYAITAT-SATSIDRATLSAVFARAFSRWAAATRLQFTEVSSA 209
+++FPG P W R L YA++ T +A + + + A AF+RWA ++F E
Sbjct: 21 FTFFPGKPRWTRPDRVLTYAVSPTATADHLPPSAVRAALRSAFARWADVIPMRFLEAERY 80
Query: 210 SNADITIGFYSGDHG--DGEAFDGPL----------GTLAHAFSPTD-GRFHLDAAEAWV 256
ADI +GFY G DG A G LAH+ P G+ HL AA W
Sbjct: 81 DAADIKVGFYLYTDGRCDGCACIDSDDDDDDGDDCEGVLAHSSMPEKSGQIHLHAAHRWT 140
Query: 257 ASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVL 316
+ T+ AVDLESVA HEIGH+LGL HSS S+MYP I RKV L +DDV
Sbjct: 141 VNLAADTAP---LAVDLESVAAHEIGHVLGLDHSSSRSSMMYPFISCRERKVRLTTDDVH 197
Query: 317 GIQSLYGTNPNF 328
GIQ LYG NP+F
Sbjct: 198 GIQELYGANPHF 209
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 151 YSYFPGGPMWPPFRRNLRYAIT-ATSATSIDRATLSAVFARAFSRWAAATRLQFTEVSSA 209
+++ G P W L YA++ +A + R + F A +RWA T L+F E +
Sbjct: 388 FTFLWGRPRWNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARY 447
Query: 210 SNADITIGFY------SGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWV------A 257
ADI +GFY D G LAHA P DGR HL AA W A
Sbjct: 448 EEADIRVGFYLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGA 507
Query: 258 SGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLG 317
GD AVDLESVAVHEIGH LGLGHSS S+MY R KV L DDV G
Sbjct: 508 GGDAPP-----LAVDLESVAVHEIGHALGLGHSSSESSMMYRHYRG---KVSLTDDDVKG 559
Query: 318 IQSLYGTNP 326
+Q LYG P
Sbjct: 560 VQELYGAKP 568
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,509,084
Number of extensions: 539894
Number of successful extensions: 1689
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1674
Number of HSP's successfully gapped: 6
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)