BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0739700 Os02g0739700|AK111537
(441 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0739700 Transcription factor E2F/dimerisation partner ... 830 0.0
Os06g0245900 Transcription factor E2F/dimerisation partner ... 497 e-141
Os04g0416100 Similar to Transcription factor E2F1 (E2F-1) (... 67 2e-11
>Os02g0739700 Transcription factor E2F/dimerisation partner (TDP) family protein
Length = 441
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/418 (96%), Positives = 404/418 (96%)
Query: 24 MTEAVPSLPQRQQPVFVEGRGGKLRDHAYSRKQKSLGLLCSNFVALYNRDDVESIGLDDA 83
MTEAVPSLPQRQQPVFVEGRGGKLRDHAYSRKQKSLGLLCSNFVALYNRDDVESIGLDDA
Sbjct: 24 MTEAVPSLPQRQQPVFVEGRGGKLRDHAYSRKQKSLGLLCSNFVALYNRDDVESIGLDDA 83
Query: 84 ARRLGVERRRIYDIVNVLESVGILVRKAKNRYSWIGFGGVPMALRELKERALREKSGLAP 143
ARRLGVERRRIYDIVNVLESVGILVRKAKNRYSWIGFGGVPMALRELKERALREKSGLAP
Sbjct: 84 ARRLGVERRRIYDIVNVLESVGILVRKAKNRYSWIGFGGVPMALRELKERALREKSGLAP 143
Query: 144 LPVEEPSAAIMSXXXXXXXXXXXXXXTESEKLSQPVDNPSDNKPGAPRCRLRSDHRKEKS 203
LPVEEPSAAIMS TESEKLSQPVDNPSDNKPGAPRCRLRSDHRKEKS
Sbjct: 144 LPVEEPSAAIMSDDEDEDKMGDADGDTESEKLSQPVDNPSDNKPGAPRCRLRSDHRKEKS 203
Query: 204 LGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEGHAENSMRTKVRRLYDIANVLSSLNFID 263
LGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEGHAENSMRTKVRRLYDIANVLSSLNFID
Sbjct: 204 LGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEGHAENSMRTKVRRLYDIANVLSSLNFID 263
Query: 264 KIQQADSRKPAFRWLGSAGKPKAENGVTIAVPPPGKTISNKRAFGTELTNIDINRSRLDS 323
KIQQADSRKPAFRWLGSAGKPKAENGVTIAVPPPGKTISNKRAFGTELTNIDINRSRLDS
Sbjct: 264 KIQQADSRKPAFRWLGSAGKPKAENGVTIAVPPPGKTISNKRAFGTELTNIDINRSRLDS 323
Query: 324 TIPKKAKLTLSGGEILKNCKLSVQKQLGQGSKGGFVYGPFHPAGARKQELDNGNKGHTDN 383
TIPKKAKLTLSGGEILKNCKLSVQKQLGQGSKGGFVYGPFHPAGARKQELDNGNKGHTDN
Sbjct: 324 TIPKKAKLTLSGGEILKNCKLSVQKQLGQGSKGGFVYGPFHPAGARKQELDNGNKGHTDN 383
Query: 384 VQNWESLAASFRPQYQNQALGDLFAHYVEAWKSWYSEFAQGSSMMQQHFGMPVINQFL 441
VQNWESLAASFRPQYQNQALGDLFAHYVEAWKSWYSEFAQGSSMMQQHFGMPVINQFL
Sbjct: 384 VQNWESLAASFRPQYQNQALGDLFAHYVEAWKSWYSEFAQGSSMMQQHFGMPVINQFL 441
>Os06g0245900 Transcription factor E2F/dimerisation partner (TDP) family protein
Length = 425
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/380 (67%), Positives = 298/380 (78%), Gaps = 17/380 (4%)
Query: 48 RDHAYSRKQKSLGLLCSNFVALYNRDDVESIGLDDAARRLGVERRRIYDIVNVLESVGIL 107
R HAYSRKQKSLGLLC+NFVALY+R+DVES+GLDDAARRLGVERRRIYDIVNVLES+G+L
Sbjct: 51 RHHAYSRKQKSLGLLCTNFVALYDREDVESVGLDDAARRLGVERRRIYDIVNVLESIGML 110
Query: 108 VRKAKNRYSWIGFGGVPMALRELKERALREKSGLAPLPVEEPSAAIMSXXXXXXXXXXXX 167
VR+AKNRY+WIGFGGVP AL +LKE +LR S +A ++E SAA +S
Sbjct: 111 VRRAKNRYTWIGFGGVPAALAKLKEMSLRAVSSVASPSLDETSAANVSDDEDDDKLDDAE 170
Query: 168 XXTESEK--LSQPVDNPSDNKPGAPRCRLRSDHRKEKSLGLLTQNFVKLFLTMEVDTISL 225
ESEK LSQ +DNPSD KP AP C+LRS+HRKEKSLGLLTQNFVKLFLTME++TISL
Sbjct: 171 GDAESEKLSLSQSIDNPSD-KPDAPPCKLRSEHRKEKSLGLLTQNFVKLFLTMEIETISL 229
Query: 226 DEAAKLLLGEGHAENSMRTKVRRLYDIANVLSSLNFIDKIQQADSRKPAFRWLGSAGKPK 285
DEAAK LLGEGHA N+MRTKVRRLYDIANVLSSLN I+K QQADSRKPAFRWLG A K
Sbjct: 230 DEAAKRLLGEGHAANNMRTKVRRLYDIANVLSSLNLIEKTQQADSRKPAFRWLGQA---K 286
Query: 286 AENGVTIAVPPPGKTISNKRAFGTELTNIDINRSRLDSTIPKKAKLTLSGGEILKNCKLS 345
GVT+A+PP KT+ NKRAFGT+LTNID R +LDST+ + K T GG + N
Sbjct: 287 RNEGVTVALPPT-KTLPNKRAFGTDLTNIDNKRGKLDSTMENRGKPTQDGGNLFNN---- 341
Query: 346 VQKQLGQGSKGGFVYGPFHPAGARKQELDNGNKG----HTDNVQNWESLAASFRPQYQNQ 401
+Q+QLGQ ++ FVYGPFHPA ARKQE +GN+ ++Q+WE+LA+SFRPQYQN
Sbjct: 342 LQRQLGQENRSDFVYGPFHPAVARKQE--HGNRTVQEKERKSIQDWENLASSFRPQYQNP 399
Query: 402 ALGDLFAHYVEAWKSWYSEF 421
L DLF HY+EAW+SWYS+
Sbjct: 400 GLNDLFGHYMEAWRSWYSDL 419
>Os04g0416100 Similar to Transcription factor E2F1 (E2F-1) (Fragment)
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%)
Query: 35 QQPVFVEGRGGKLRDHAYSRKQKSLGLLCSNFVALYNRDDVESIGLDDAARRLGVERRRI 94
Q P+ G G A SR SLGLL F+ L + + L+DAA+ L V +RRI
Sbjct: 120 QTPISNAGSPGNPSTPASSRYDNSLGLLTRKFINLLKQTQDGILDLNDAAKILDVRKRRI 179
Query: 95 YDIVNVLESVGILVRKAKNRYSWIG 119
YDI NVLE G++ +K KNR W G
Sbjct: 180 YDITNVLEGTGLIEKKLKNRIRWRG 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,518,037
Number of extensions: 609568
Number of successful extensions: 1336
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1322
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)