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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0245900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor E2F/dimerisation partner (TDP) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0511) R2 : 0.581
β1 : -3.19 (0.188) R2dD : 0.278 R2D : 0.28
β2 : 0.392 (0.143) R2dC : 0.00871 R2C : 0.046
β3 : 1.86 (0.158) R2dE : 0.166 R2E : 0.214
β4 : -3.75 (0.48) R2dD*C : 0.0583 R2D*C : 0.0793
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.5 (0.109) R2dN8 : 0.0258 R2N8 : -0.00609
σ : 0.954
deviance : 419.21
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_____
C
peak time of C : 10.2
E
wheather : humidity
threshold : 89
memory length : 263
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.97
open length of G : 5.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.13 0.962 4.55 -3.19 0.415 1.83 -3.65 -0.446 -0.504 9.98 89.67 268 8.97 5.92
419.21 0.954 4.55 -3.19 0.392 1.86 -3.75 -- -0.5 10.2 89 263 8.97 5.88
467.12 1.01 4.57 -3.26 0.583 1.88 -- -1.05 -0.553 9.98 90.64 267 8.9 5.9
476.42 1.02 4.56 -3.31 0.407 1.82 -- -- -0.524 10.3 89 263 8.88 5.95
463.71 1 4.56 -3.3 -- 1.76 -- -1.92 -0.445 -- 110.2 218 8.85 6.29
477.53 1.02 4.54 -3.23 1.65 -- -3.2 -- -0.506 12.8 -- -- -- --
519.16 1.07 4.55 -3.34 1.67 -- -- -- -0.519 13.3 -- -- -- --
483.58 1.02 4.56 -3.27 -- 1.98 -- -- -0.456 -- 144.3 308 8.22 5.88
765.85 1.29 4.52 -- 0.501 1.81 -- -- -0.214 10.5 87.95 269 8.73 6.15
692.41 1.23 4.58 -3.41 -- -- -- -- -0.553 -- -- -- -- --
813.25 1.33 4.47 -- 1.73 -- -- -- -0.147 13.3 -- -- -- --
770.63 1.29 4.49 -- -- 2 -- -- -0.145 -- 87.69 243 8.68 6.15
998.33 1.47 4.49 -- -- -- -- -- -0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 419.76 humidity 90.0 270 < th dose independent rect. 9 6
2 421.34 radiation 40.0 270 < th dose independent rect. 14 19
6 422.27 temperature 10.0 270 > th dose dependent rect. 2 7
7 422.53 temperature 15.0 270 > th dose independent rect. 9 6
8 422.62 precipitation 0.1 270 < th dose independent rect. 15 18
9 422.62 precipitation 0.1 270 < th dose dependent rect. 15 18
16 423.97 wind 7.0 270 < th dose independent rect. 9 6
19 424.32 radiation 10.0 270 > th dose independent rect. 9 5
21 424.40 radiation 40.0 270 < th dose independent rect. 2 8
26 425.08 temperature 20.0 270 > th dose independent rect. 2 7
29 425.36 precipitation 0.1 270 < th dose independent rect. 9 6
30 425.36 precipitation 0.1 270 < th dose dependent rect. 9 6
38 425.77 atmosphere 1015.0 270 < th dose independent rect. 9 6
39 425.77 temperature 10.0 270 > th dose independent rect. 15 18
46 426.27 atmosphere 995.0 270 > th dose independent rect. 15 18
49 426.47 atmosphere 995.0 270 > th dose independent rect. 9 5
58 427.13 wind 9.0 270 < th dose independent rect. 15 18
62 427.36 wind 9.0 270 < th dose dependent rect. 9 6
74 428.05 wind 1.0 270 > th dose independent rect. 9 6
77 428.20 humidity 50.0 270 > th dose independent rect. 9 6
81 428.32 wind 9.0 270 < th dose independent rect. 10 16
106 429.29 precipitation 0.1 270 < th dose independent rect. 2 8
107 429.29 precipitation 0.1 270 < th dose dependent rect. 2 8
108 429.35 temperature 10.0 270 > th dose dependent rect. 9 5
115 429.49 temperature 10.0 270 > th dose dependent rect. 16 16
130 430.32 temperature 15.0 270 > th dose independent rect. 9 17
133 430.40 temperature 10.0 270 > th dose independent rect. 2 8
134 430.40 atmosphere 995.0 270 > th dose independent rect. 2 8
135 430.40 atmosphere 1015.0 270 < th dose independent rect. 2 8
140 430.51 humidity 50.0 270 > th dose independent rect. 2 8
142 430.57 wind 9.0 270 < th dose independent rect. 2 8
144 430.62 radiation 40.0 10 < th dose dependent rect. 16 19
157 430.71 radiation 40.0 90 < th dose dependent rect. 15 20
177 431.09 temperature 30.0 270 < th dose independent rect. 2 8
178 431.14 temperature 15.0 14400 > th dose independent rect. 21 3
191 431.45 temperature 15.0 14400 < th dose independent rect. 22 2
199 431.64 temperature 15.0 14400 < th dose independent rect. 20 4
210 431.84 atmosphere 1015.0 270 < th dose independent rect. 15 18
214 431.90 temperature 15.0 14400 < th dose independent rect. 9 18
224 432.07 radiation 40.0 10 < th dose independent rect. 16 19
225 432.08 temperature 20.0 10 > th dose independent rect. 11 5
231 432.16 temperature 15.0 14400 > th dose independent rect. 8 19
241 432.23 temperature 15.0 14400 < th dose independent rect. 5 22
280 432.56 temperature 15.0 14400 < th dose independent sin 1 NA
307 432.75 temperature 15.0 14400 > th dose independent rect. 6 8
319 432.93 atmosphere 1010.0 270 < th dose independent rect. 11 2
351 433.12 temperature 15.0 14400 < th dose independent rect. 5 10
362 433.21 temperature 15.0 14400 < th dose independent rect. 16 11
363 433.21 radiation 40.0 270 < th dose dependent rect. 2 8
379 433.34 temperature 15.0 14400 > th dose independent sin 23 NA
427 433.65 temperature 15.0 14400 < th dose independent rect. 21 23
440 433.73 wind 9.0 270 < th dose independent rect. 22 16
442 433.75 temperature 15.0 14400 < th dose independent rect. 24 23
444 433.78 temperature 15.0 14400 < th dose independent sin 16 NA
455 433.85 precipitation 0.1 90 < th dose independent rect. 11 16
457 433.85 precipitation 0.1 90 < th dose dependent rect. 11 16
465 433.89 precipitation 0.1 270 < th dose independent rect. 9 17
468 433.89 precipitation 0.1 270 < th dose dependent rect. 9 17
473 433.90 temperature 15.0 14400 < th dose independent rect. 19 23
478 433.91 temperature 15.0 14400 < th dose independent rect. 14 23
479 433.92 temperature 15.0 14400 < th dose independent no NA NA
591 434.33 radiation 1.0 270 > th dose dependent rect. 9 5
592 434.33 temperature 15.0 10 > th dose dependent rect. 3 8
606 434.42 temperature 15.0 14400 > th dose independent rect. 7 4
610 434.42 humidity 50.0 270 > th dose dependent rect. 2 8
619 434.45 temperature 15.0 14400 > th dose independent rect. 15 12
620 434.45 wind 1.0 270 > th dose independent rect. 10 16
625 434.50 temperature 15.0 14400 < th dose independent rect. 5 6
669 434.75 temperature 10.0 10 > th dose dependent rect. 11 5
672 434.78 temperature 15.0 14400 > th dose independent sin 17 NA
706 434.94 atmosphere 995.0 270 > th dose independent rect. 14 8
746 435.12 temperature 15.0 14400 < th dose independent rect. 24 20
761 435.23 temperature 10.0 270 > th dose independent rect. 14 8
762 435.23 temperature 10.0 270 > th dose independent rect. 22 16
763 435.23 atmosphere 995.0 270 > th dose independent rect. 22 16
784 435.33 precipitation 0.1 270 < th dose independent rect. 22 16
785 435.33 precipitation 0.1 270 < th dose dependent rect. 22 16
810 435.45 humidity 50.0 270 > th dose independent rect. 22 16
822 435.52 precipitation 0.1 270 < th dose independent rect. 14 8
825 435.52 precipitation 0.1 270 < th dose dependent rect. 14 8
828 435.53 radiation 1.0 270 > th dose dependent rect. 10 3
858 435.69 wind 1.0 270 > th dose independent rect. 22 16
874 435.76 atmosphere 995.0 10 > th dose independent rect. 16 19
880 435.78 humidity 50.0 270 > th dose independent rect. 14 19
923 436.07 radiation 40.0 10 < th dose dependent sin 16 NA
968 436.37 wind 1.0 270 > th dose independent rect. 14 8
977 436.41 wind 9.0 270 < th dose dependent rect. 14 19