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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0739700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor E2F/dimerisation partner (TDP) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0566) R2 : 0.0587
β1 : -0.718 (0.207) R2dD : 0.0257 R2D : 0.0259
β2 : 0.569 (0.146) R2dC : 0.0316 R2C : 0.0309
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0578 (0.121) R2dN8 : 0.000635 R2N8 : 0.0018
σ : 1.06
deviance : 515.15
__
_____
C
peak time of C : 7.26
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
495.77 1.05 4.05 0.724 0.605 -44.6 -0.337 -88.8 0.135 7.24 14.96 1481 -- --
507.91 1.06 3.52 -0.641 0.581 -1.94 -0.0806 -- 0.077 7.44 14.96 1481 -- --
496.04 1.04 4.04 0.71 0.603 -44.4 -- -88.4 0.135 7.38 15 1480 -- --
496.74 1.04 3.53 -0.429 0.592 -2.46 -- -- 0.107 7.44 15 1467 -- --
515.39 1.06 4.06 0.707 -- -44.3 -- -88.4 0.141 -- 14.99 1480 -- --
515.15 1.06 3.53 -0.718 0.569 -- 0.00957 -- 0.0578 7.27 -- -- -- --
515.15 1.06 3.53 -0.718 0.569 -- -- -- 0.0578 7.26 -- -- -- --
515.44 1.06 3.53 -0.436 -- -2.38 -- -- 0.138 -- 15.1 1467 -- --
501.09 1.04 3.5 -- 0.588 -2.88 -- -- 0.177 7.48 15.1 1477 -- --
532.33 1.08 3.54 -0.707 -- -- -- -- 0.0675 -- -- -- -- --
528.72 1.08 3.51 -- 0.562 -- -- -- 0.138 7.34 -- -- -- --
519.86 1.06 3.51 -- -- -2.75 -- -- 0.194 -- 15.07 1547 -- --
545.54 1.09 3.52 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 488.04 temperature 15.0 90 > th dose independent rect. 9 19
4 489.28 temperature 20.0 720 > th dose independent rect. 9 8
6 489.64 wind 1.0 4320 > th dose independent rect. 2 1
7 489.64 temperature 15.0 270 > th dose independent rect. 22 15
11 489.92 wind 1.0 4320 < th dose independent rect. 2 1
14 490.32 radiation 1.0 10 < th dose dependent rect. 6 1
17 490.41 temperature 10.0 90 > th dose dependent rect. 10 18
25 491.32 wind 1.0 90 > th dose independent rect. 24 15
32 491.54 temperature 20.0 1440 < th dose independent rect. 15 2
33 491.54 temperature 15.0 270 > th dose independent rect. 6 22
43 491.94 wind 1.0 4320 < th dose independent rect. 1 3
61 492.47 temperature 20.0 720 < th dose independent rect. 11 5
63 492.50 humidity 90.0 90 < th dose independent rect. 10 19
68 492.63 wind 1.0 4320 > th dose independent rect. 1 3
69 492.63 temperature 20.0 720 < th dose independent rect. 10 7
98 493.14 atmosphere 1010.0 90 < th dose independent rect. 10 18
110 493.47 radiation 1.0 10 < th dose independent rect. 6 1
113 493.47 wind 1.0 4320 < th dose dependent rect. 2 1
116 493.52 temperature 25.0 720 < th dose dependent rect. 11 5
117 493.53 temperature 20.0 4320 > th dose independent rect. 13 2
129 493.73 temperature 25.0 720 < th dose dependent rect. 10 7
131 493.76 temperature 15.0 1440 > th dose independent rect. 2 2
137 493.83 temperature 25.0 10 > th dose dependent rect. 22 12
142 493.88 temperature 20.0 90 > th dose independent rect. 9 12
160 494.27 temperature 15.0 1440 < th dose independent rect. 3 1
163 494.28 temperature 25.0 720 < th dose dependent rect. 14 1
171 494.39 temperature 20.0 270 < th dose dependent rect. 11 10
181 494.48 temperature 15.0 1440 > th dose independent rect. 1 8
183 494.49 temperature 15.0 1440 > th dose independent rect. 20 13
184 494.50 radiation 40.0 90 < th dose independent rect. 4 7
189 494.54 temperature 15.0 1440 > th dose independent rect. 19 9
190 494.54 humidity 90.0 720 < th dose independent rect. 9 9
191 494.54 temperature 15.0 1440 > th dose independent rect. 1 12
193 494.56 temperature 30.0 90 < th dose dependent rect. 14 9
198 494.58 radiation 1.0 720 < th dose dependent rect. 9 7
200 494.59 humidity 60.0 30 > th dose dependent rect. 4 20
203 494.62 temperature 15.0 1440 > th dose independent sin 10 NA
210 494.65 humidity 90.0 10 < th dose dependent rect. 9 20
215 494.67 temperature 15.0 1440 < th dose dependent rect. 3 1
217 494.69 temperature 15.0 1440 > th dose independent rect. 15 14
222 494.71 temperature 15.0 1440 > th dose independent rect. 20 17
231 494.73 temperature 15.0 1440 < th dose independent rect. 21 7
237 494.75 temperature 15.0 1440 > th dose independent rect. 23 1
241 494.76 temperature 15.0 1440 > th dose independent rect. 1 15
249 494.79 temperature 15.0 1440 > th dose independent rect. 1 10
259 494.82 temperature 15.0 1440 < th dose independent rect. 24 15
262 494.82 temperature 25.0 10 > th dose dependent rect. 7 3
266 494.84 temperature 15.0 1440 < th dose independent sin 8 NA
275 494.85 temperature 15.0 1440 < th dose independent rect. 21 13
284 494.86 temperature 15.0 1440 < th dose independent rect. 21 10
302 494.89 temperature 15.0 1440 < th dose independent rect. 1 11
320 494.91 temperature 25.0 10 > th dose dependent rect. 18 16
328 494.93 temperature 15.0 1440 < th dose dependent rect. 1 13
335 494.94 temperature 15.0 1440 > th dose independent rect. 15 18
353 494.97 temperature 15.0 1440 < th dose dependent rect. 1 11
384 495.03 temperature 15.0 1440 > th dose independent rect. 7 22
406 495.07 temperature 15.0 1440 < th dose dependent sin 5 NA
408 495.07 temperature 15.0 1440 < th dose dependent rect. 24 19
417 495.10 temperature 15.0 1440 < th dose independent rect. 1 6
424 495.10 temperature 15.0 1440 < th dose dependent rect. 23 16
444 495.14 temperature 25.0 10 > th dose dependent rect. 1 9
463 495.17 temperature 15.0 1440 < th dose dependent rect. 23 13
475 495.20 humidity 50.0 270 > th dose dependent rect. 1 22
477 495.21 temperature 20.0 10 < th dose dependent sin 18 NA
491 495.23 temperature 15.0 1440 > th dose independent rect. 15 22
497 495.24 temperature 15.0 1440 < th dose dependent rect. 23 5
505 495.25 temperature 15.0 1440 > th dose independent rect. 10 19
517 495.27 temperature 15.0 1440 < th dose dependent rect. 22 9
556 495.34 radiation 10.0 4320 > th dose independent rect. 12 5
558 495.34 temperature 15.0 1440 < th dose dependent rect. 24 1
593 495.40 temperature 25.0 10 > th dose dependent rect. 4 6
599 495.42 temperature 15.0 1440 < th dose dependent rect. 1 6
664 495.50 humidity 50.0 30 > th dose dependent rect. 15 22
689 495.56 precipitation 0.1 4320 < th dose independent rect. 3 2
699 495.56 precipitation 0.1 4320 < th dose dependent rect. 3 2
725 495.61 temperature 20.0 90 < th dose dependent rect. 14 9
749 495.65 radiation 20.0 10 < th dose independent rect. 5 19
768 495.68 temperature 15.0 1440 > th dose independent rect. 12 21
792 495.71 temperature 25.0 90 > th dose dependent rect. 8 1
813 495.77 radiation 20.0 90 < th dose independent rect. 14 10
817 495.79 temperature 20.0 90 < th dose independent sin 19 NA
832 495.81 humidity 60.0 10 > th dose independent rect. 15 22
857 495.87 radiation 20.0 4320 < th dose dependent rect. 12 5
895 495.94 temperature 15.0 1440 < th dose independent rect. 10 19
925 495.96 radiation 40.0 270 < th dose independent rect. 12 11
954 496.01 temperature 15.0 1440 > th dose independent no NA NA
955 496.01 temperature 15.0 1440 < th dose independent no NA NA