BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0719100 Os02g0719100|AK069715
(706 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0719100 Similar to Fimbrin/plastin-like (Fragment) 1311 0.0
Os02g0588300 Similar to Fimbrin 1 (AtFIM1) 892 0.0
Os01g0514600 Similar to Fimbrin 1 (AtFIM1) 795 0.0
>Os02g0719100 Similar to Fimbrin/plastin-like (Fragment)
Length = 706
Score = 1311 bits (3392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/706 (91%), Positives = 645/706 (91%)
Query: 1 MSGFVGVVVSDPSLQGQFTQVELRSLKAKFLSLKRDSGGHATTKNLPGLMKKLRGLNEVI 60
MSGFVGVVVSDPSLQGQFTQVELRSLKAKFLSLKRDSGGHATTKNLPGLMKKLRGLNEVI
Sbjct: 1 MSGFVGVVVSDPSLQGQFTQVELRSLKAKFLSLKRDSGGHATTKNLPGLMKKLRGLNEVI 60
Query: 61 SEEEIAAHLSQSYPDADQEIEFESFLREYLNLQSRVSAKEXXXXXXXXXKXXXXXXXXXX 120
SEEEIAAHLSQSYPDADQEIEFESFLREYLNLQSRVSAKE K
Sbjct: 61 SEEEIAAHLSQSYPDADQEIEFESFLREYLNLQSRVSAKEGGGGGGGGGKTASSFLKSST 120
Query: 121 XXXXHNLNQAEKSSYVAHINTYLREDPFLKKYLPIEPTDNQLFDLVRDGVLLCKLINLAV 180
HNLNQAEKSSYVAHINTYLREDPFLKKYLPIEPTDNQLFDLVRDGVLLCKLINLAV
Sbjct: 121 TTLLHNLNQAEKSSYVAHINTYLREDPFLKKYLPIEPTDNQLFDLVRDGVLLCKLINLAV 180
Query: 181 PGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQ 240
PGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQ
Sbjct: 181 PGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQ 240
Query: 241 IIKIQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVSNF 300
IIKIQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVSNF
Sbjct: 241 IIKIQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVSNF 300
Query: 301 STDVKDGEAYAYLLKALAPEHSPETTLETKDPSERAKLVLEQAEKLDCKRYLTPKDITEG 360
STDVKDGEAYAYLLKALAPEHSPETTLETKDPSERAKLVLEQAEKLDCKRYLTPKDITEG
Sbjct: 301 STDVKDGEAYAYLLKALAPEHSPETTLETKDPSERAKLVLEQAEKLDCKRYLTPKDITEG 360
Query: 361 SANLNLAFVAQIFQHRNGLTSDTRQVTLNQTASRDDVLLSREERSFRMWINSLGVDSYVN 420
SANLNLAFVAQIFQHRNGLTSDTRQVTLNQTASRDDVLLSREERSFRMWINSLGVDSYVN
Sbjct: 361 SANLNLAFVAQIFQHRNGLTSDTRQVTLNQTASRDDVLLSREERSFRMWINSLGVDSYVN 420
Query: 421 NVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKFSLVN 480
NVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKFSLVN
Sbjct: 421 NVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKFSLVN 480
Query: 481 LAGNDIVQGNKKLIVALLWQLMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKVKA 540
LAGNDIVQGNKKLIVALLWQLMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKVKA
Sbjct: 481 LAGNDIVQGNKKLIVALLWQLMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKVKA 540
Query: 541 SGRTSQMESFKDKSLSNGRFFLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVARK 600
SGRTSQMESFKDKSLSNGRFFLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVARK
Sbjct: 541 SGRTSQMESFKDKSLSNGRFFLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVARK 600
Query: 601 IGCSVFLLPEDIIEVNQKMILTLTASIMYWSLQKXXXXXXXXXXXXXXXXXXXXXXXXXX 660
IGCSVFLLPEDIIEVNQKMILTLTASIMYWSLQK
Sbjct: 601 IGCSVFLLPEDIIEVNQKMILTLTASIMYWSLQKQPQSQSETSEQSEPSSMASDAASDIA 660
Query: 661 XXXXXXXXXXXXGEEVNSLSDSMSNLTTYDAISNAPPAENGNGVAG 706
GEEVNSLSDSMSNLTTYDAISNAPPAENGNGVAG
Sbjct: 661 SEDAASITAASEGEEVNSLSDSMSNLTTYDAISNAPPAENGNGVAG 706
>Os02g0588300 Similar to Fimbrin 1 (AtFIM1)
Length = 673
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/636 (69%), Positives = 522/636 (82%), Gaps = 10/636 (1%)
Query: 1 MSGFVGVVVSDPSLQGQFTQVELRSLKAKFLSLKRDSGGHATTKNLPGLMKKLRGLNEVI 60
MS FVGV+VSDP LQ QFTQV+LR+LK KF+S+K+ H K+LP +M+KLRG++EV+
Sbjct: 1 MSSFVGVLVSDPWLQSQFTQVQLRTLKTKFVSVKKSDADHVAVKDLPPVMEKLRGIHEVL 60
Query: 61 SEEEIAAHLSQSYPDADQEIEFESFLREYLNLQSRVSAKEXXXXXXXXXKXXXXXXXXXX 120
SEEEI+ L +SYPD +Q IEFESFLREYLNLQ++ S+K K
Sbjct: 61 SEEEISTFLGESYPDMNQTIEFESFLREYLNLQAKGSSKTGGKKKL---KGSVSFLKAST 117
Query: 121 XXXXHNLNQAEKSSYVAHINTYLREDPFLKKYLPIEPTDNQLFDLVRDGVLLCKLINLAV 180
H +N++EK+SYV HIN +L ED FLK +LP++P+ N +F+LVRDGVLLCKLIN+AV
Sbjct: 118 TTLLHVINESEKTSYVNHINNFLGEDSFLKNFLPLDPSTNDIFNLVRDGVLLCKLINVAV 177
Query: 181 PGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQ 240
PGTIDERAIN K+ NPWERNENHTLCLNSAKAIGCTVVNIGTQDL+E RPHL+LGL+SQ
Sbjct: 178 PGTIDERAINTKKDPNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEARPHLVLGLLSQ 237
Query: 241 IIKIQLLADLNLKKTPQLVELF--DDSKDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVS 298
IIKIQLLADLNLKKTPQL EL D+SK+ +E+++L+P+KMLL+WMN HLKKAGYKKTV+
Sbjct: 238 IIKIQLLADLNLKKTPQLAELVADDNSKEAEELVTLAPDKMLLKWMNFHLKKAGYKKTVT 297
Query: 299 NFSTDVKDGEAYAYLLKALAPEHSPETTLETKDPSERAKLVLEQAEKLDCKRYLTPKDIT 358
NFSTDVKDGEAYAYLL LAPE S T +ET DP+ERAK VLE AEKL+C RY+T KDI
Sbjct: 298 NFSTDVKDGEAYAYLLNTLAPELSSTTMIETSDPNERAKKVLETAEKLECTRYVTSKDIV 357
Query: 359 EGSANLNLAFVAQIFQHRNGLTSDTRQVTLNQTASRDDVLLSREERSFRMWINSLGVDSY 418
EGSANLNLAFVAQIF HRNGL+ + + T DDV +REER+FR+WINSLG+ +Y
Sbjct: 358 EGSANLNLAFVAQIFHHRNGLSDNNVAPVVQDTP--DDVEATREERAFRLWINSLGIATY 415
Query: 419 VNNVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKFSL 478
VNN+FEDVR GWVLLEVLDK+SPG VNWK ASKPPI +PFRK+EN NQV++IGKELKFS+
Sbjct: 416 VNNLFEDVRTGWVLLEVLDKISPGIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKFSV 475
Query: 479 VNLAGNDIVQGNKKLIVALLWQLMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKV 538
VN++GNDIVQGNKKLI+A LWQLMR ++LQLL LR+H S+ KEITDADIL WAN+KV
Sbjct: 476 VNISGNDIVQGNKKLILAFLWQLMRTSILQLLKNLRTH---SKDKEITDADILIWANNKV 532
Query: 539 KASGRTSQMESFKDKSLSNGRFFLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVA 598
K SG+TS +E+FKDKS++NG FFLELL AV R V+ +V KGEDDEEKK NATYTISVA
Sbjct: 533 KESGKTSCIENFKDKSIANGVFFLELLHAVNHRHVDLSMVKKGEDDEEKKSNATYTISVA 592
Query: 599 RKIGCSVFLLPEDIIEVNQKMILTLTASIMYWSLQK 634
RK+GC++F+LPEDI+EVN KMIL LTASIMYWSLQK
Sbjct: 593 RKLGCTLFMLPEDIMEVNPKMILVLTASIMYWSLQK 628
>Os01g0514600 Similar to Fimbrin 1 (AtFIM1)
Length = 695
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/658 (61%), Positives = 498/658 (75%), Gaps = 36/658 (5%)
Query: 7 VVVSDPSLQGQFTQVELRSLKAKFLSLKRDSG--GHATTKNLPGLMKKL-----RGLNE- 58
VVVSDP LQ +F+Q +LR+L+A++ +L RD+ G ++LP + +G +
Sbjct: 7 VVVSDPYLQRRFSQADLRALQAQYAAL-RDAAPSGRLRLRDLPAALSSAGVGAGKGGDAE 65
Query: 59 ---------VISEEEIAAHLSQSYPDAD----QEIEFESFLREYLNLQSRVSAKEXXXXX 105
++EEE A+ L ++ AD Q + FE FLR Y +Q R+
Sbjct: 66 KENSAPAAAQLTEEEWASVL-KAVARADERPHQGVGFELFLRVYAEMQLRLKGAAAGKKA 124
Query: 106 XXXXKXXXXXXXXXXXX--------XXHNLNQAEKSSYVAHINTYLREDPFLKKYLPIEP 157
H ++++EK+SYV HIN YL EDPFL LPI+P
Sbjct: 125 GGGGGGIARSSSSSAAAFLTAATTTLLHTISESEKASYVGHINAYLAEDPFLNTALPIDP 184
Query: 158 TDNQLFDLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCT 217
+ LF L +DGVLLCKLINLAVPGTIDERAIN K++LN WE+NENHTLCLNSAKAIGCT
Sbjct: 185 ATDHLFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKAIGCT 244
Query: 218 VVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPE 277
VVNIGTQDL EGRPHLILGLISQIIKIQLLAD+NLK TPQLVEL +DSK+++E++SLSPE
Sbjct: 245 VVNIGTQDLAEGRPHLILGLISQIIKIQLLADVNLKSTPQLVELVEDSKEMEELMSLSPE 304
Query: 278 KMLLRWMNHHLKKAGYKKTVSNFSTDVKDGEAYAYLLKALAPEHSPE-TTLETKDPSERA 336
K+LLRWMN LKK G+++TV+NFS+D+KD EAYA LL LAPE S + + + KD RA
Sbjct: 305 KILLRWMNFQLKKGGFQRTVTNFSSDIKDSEAYACLLNVLAPECSAKPSPMSVKDLLHRA 364
Query: 337 KLVLEQAEKLDCKRYLTPKDITEGSANLNLAFVAQIFQHRNGLTSDTRQVTLNQTASRDD 396
+LVLE A+++ CKRYLTPKDI +G NLNLAFVA IFQ RNGL+ +QV+ S DD
Sbjct: 365 RLVLEHADRMGCKRYLTPKDIVDGLPNLNLAFVAHIFQKRNGLSKQMKQVSFVDGLS-DD 423
Query: 397 VLLSREERSFRMWINSLGVDSYVNNVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPIKL 456
+SREERSFR+WINSLG+ +Y+NNVFED+R+GWVLLEV+DK++PGSVNWK+A++PPIKL
Sbjct: 424 AQVSREERSFRLWINSLGISTYINNVFEDLRNGWVLLEVIDKIAPGSVNWKMANRPPIKL 483
Query: 457 PFRKLENCNQVVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQLMRFNMLQLLNRLRSH 516
PFRK+ENCNQV+KIGKELKFSLVN+AGNDIVQGNKKLI+A LWQLMR+N+LQLL LR H
Sbjct: 484 PFRKVENCNQVLKIGKELKFSLVNIAGNDIVQGNKKLILAFLWQLMRYNILQLLKNLRFH 543
Query: 517 SQGSQGKEITDADILKWANSKVKASGRTSQMESFKDKSLSNGRFFLELLSAVQPRVVNWK 576
S GKEITD DIL WAN KVK SG+ S+MESFKD+SLS+G FFL LL AV+PRVVNW
Sbjct: 544 ---SNGKEITDNDILIWANKKVKDSGKHSRMESFKDRSLSSGIFFLNLLGAVEPRVVNWS 600
Query: 577 VVTKGEDDEEKKLNATYTISVARKIGCSVFLLPEDIIEVNQKMILTLTASIMYWSLQK 634
+VTKGE DEEK++NA+Y ISVARK+GCS+FLLPEDI+EVNQKM+LTLTASIMYW L+K
Sbjct: 601 LVTKGEKDEEKQMNASYIISVARKLGCSIFLLPEDILEVNQKMMLTLTASIMYWHLKK 658
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,447,613
Number of extensions: 774300
Number of successful extensions: 1847
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1818
Number of HSP's successfully gapped: 3
Length of query: 706
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 598
Effective length of database: 11,396,689
Effective search space: 6815220022
Effective search space used: 6815220022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)