Os02g0588300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fimbrin 1 (AtFIM1).
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Os02g0588300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fimbrin 1 (AtFIM1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.88 | 0.607 | 7.28 | -0.785 | 0.863 | -3.08 | 0.0239 | 17.7 | -1.2 | 21.1 | 24.58 | 4416 | 1.1 | 7.03 |
| 191.78 | 0.645 | 7.45 | -2.62 | 0.814 | -1.58 | -0.048 | -- | -0.901 | 20.9 | 6.833 | 19062 | 1.29 | 7.05 |
| 166.85 | 0.602 | 7.28 | -0.793 | 0.862 | -3.09 | -- | 17.7 | -1.2 | 21.1 | 24.58 | 4418 | 1.08 | 7.03 |
| 191.55 | 0.645 | 7.46 | -2.68 | 0.851 | -1.55 | -- | -- | -0.932 | 21 | 8.151 | 19069 | 1.36 | 6.82 |
| 205.7 | 0.668 | 7.25 | -0.647 | -- | -3.1 | -- | 17.8 | -1.15 | -- | 24.34 | 4541 | 1.3 | 6.58 |
| 212.24 | 0.683 | 7.6 | -3.83 | 0.946 | -- | -0.363 | -- | -1.56 | 20.7 | -- | -- | -- | -- |
| 212.65 | 0.683 | 7.6 | -3.82 | 0.945 | -- | -- | -- | -1.56 | 20.8 | -- | -- | -- | -- |
| 189.22 | 0.641 | 7.41 | -2.7 | -- | -2.51 | -- | -- | -1.02 | -- | -20.98 | 10477 | 2.48 | 5.56 |
| 233.7 | 0.712 | 7.31 | -- | 0.972 | -3 | -- | -- | -0.271 | 20.9 | -52.02 | 47520 | 1.04 | 2.33 |
| 263.33 | 0.758 | 7.57 | -3.82 | -- | -- | -- | -- | -1.57 | -- | -- | -- | -- | -- |
| 596.34 | 1.14 | 7.5 | -- | 0.958 | -- | -- | -- | -1.14 | 20.5 | -- | -- | -- | -- |
| 250.13 | 0.737 | 7.29 | -- | -- | -3.07 | -- | -- | -0.284 | -- | -48.15 | 46658 | 2.73 | 0.0514 |
| 647.63 | 1.19 | 7.48 | -- | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 3 | 171.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 10 | 172.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 16 | 174.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 18 | 174.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 26 | 175.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 28 | 175.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 32 | 175.56 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 41 | 175.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 62 | 177.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 99 | 178.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 147 | 179.35 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 152 | 179.43 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 159 | 179.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 167 | 179.74 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 8 |
| 171 | 179.81 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 8 |
| 185 | 180.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 193 | 180.20 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 17 |
| 220 | 180.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 282 | 181.48 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 316 | 181.90 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 349 | 182.25 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 354 | 182.30 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 375 | 182.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 420 | 182.90 | wind | 5 | 14400 | > th | dose independent | sin | 7 | NA |
| 448 | 183.13 | wind | 5 | 14400 | < th | dose independent | sin | 7 | NA |
| 467 | 183.23 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 468 | 183.23 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 487 | 183.32 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 507 | 183.47 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 7 |
| 528 | 183.59 | wind | 5 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 532 | 183.62 | wind | 5 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 536 | 183.64 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 537 | 183.64 | wind | 5 | 14400 | > th | dose dependent | sin | 7 | NA |
| 557 | 183.75 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 572 | 183.84 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 585 | 183.90 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 15 |
| 588 | 183.92 | temperature | 20 | 14400 | > th | dose independent | sin | 21 | NA |
| 624 | 184.11 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 655 | 184.24 | temperature | 20 | 14400 | < th | dose independent | sin | 21 | NA |
| 661 | 184.26 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 663 | 184.26 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 701 | 184.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 705 | 184.40 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 741 | 184.51 | temperature | 20 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 780 | 184.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 870 | 184.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 880 | 184.92 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 922 | 185.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 933 | 185.08 | temperature | 20 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 984 | 185.22 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |