BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0712500 Os02g0712500|AK100094
(518 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0712500 Protein of unknown function DUF23 family protein 942 0.0
Os06g0328800 Protein of unknown function DUF23 family protein 778 0.0
Os06g0624700 Protein of unknown function DUF23 family protein 615 e-176
AK111115 87 4e-17
>Os02g0712500 Protein of unknown function DUF23 family protein
Length = 518
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/518 (88%), Positives = 458/518 (88%)
Query: 1 MKNGARKDAXXXXXXVFVPCVDIKSFVLSLAFLTVFVALWQLQPYGXXXXXXXXXXXXXX 60
MKNGARKDA VFVPCVDIKSFVLSLAFLTVFVALWQLQPYG
Sbjct: 1 MKNGARKDAGGGGGGVFVPCVDIKSFVLSLAFLTVFVALWQLQPYGSLLTAARSTASVSA 60
Query: 61 XPCSLIXXXXXXXXXXGVIRSENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPNKRE 120
PCSLI GVIRSENS EDPNKRE
Sbjct: 61 SPCSLIATPAAAAASAGVIRSENSTADTAKTAPAAVASAVPARLARAARPARVEDPNKRE 120
Query: 121 LRPYGSAAALFVQMGAYRGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGNPSPRPV 180
LRPYGSAAALFVQMGAYRGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGNPSPRPV
Sbjct: 121 LRPYGSAAALFVQMGAYRGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGNPSPRPV 180
Query: 181 RTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRRYERFVALEE 240
RTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRRYERFVALEE
Sbjct: 181 RTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRRYERFVALEE 240
Query: 241 APGSYDESRFSPPFPYDYLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHFVFHDAGGIS 300
APGSYDESRFSPPFPYDYLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHFVFHDAGGIS
Sbjct: 241 APGSYDESRFSPPFPYDYLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHFVFHDAGGIS 300
Query: 301 PEVKAVLDPWVRAGRLTVQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEY 360
PEVKAVLDPWVRAGRLTVQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEY
Sbjct: 301 PEVKAVLDPWVRAGRLTVQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEY 360
Query: 361 IYLPNGQTLDQVLGKLSGYSQFTIEQNPMSSKLCVQDPSKDYSREWGFEKLVFRNSITKV 420
IYLPNGQTLDQVLGKLSGYSQFTIEQNPMSSKLCVQDPSKDYSREWGFEKLVFRNSITKV
Sbjct: 361 IYLPNGQTLDQVLGKLSGYSQFTIEQNPMSSKLCVQDPSKDYSREWGFEKLVFRNSITKV 420
Query: 421 RRDRKYAIQARNAYSAGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCREFVPVPV 480
RRDRKYAIQARNAYSAGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCREFVPVPV
Sbjct: 421 RRDRKYAIQARNAYSAGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCREFVPVPV 480
Query: 481 NGSKLMFEGIPYVYDDNMKRLAGQIKRFEKEAIGSAHT 518
NGSKLMFEGIPYVYDDNMKRLAGQIKRFEKEAIGSAHT
Sbjct: 481 NGSKLMFEGIPYVYDDNMKRLAGQIKRFEKEAIGSAHT 518
>Os06g0328800 Protein of unknown function DUF23 family protein
Length = 521
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/504 (74%), Positives = 406/504 (80%), Gaps = 9/504 (1%)
Query: 18 VPCVDIKSFVLSLAFLTVFVALWQLQPYGXXXXXXXXXXXXXXXPCSLIXXXXXXXXXXG 77
V C D+KSFV SLA LT+ +ALWQL PY PC L+
Sbjct: 24 VTCFDVKSFVASLALLTLIMALWQLHPY---QPLVLLPAALSSSPCPLLPRSPTSGIAVS 80
Query: 78 VIRS---ENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPNKRELRPYGSAAALFVQM 134
+ + NS DPNKRELRPYG+AAALFVQM
Sbjct: 81 FLSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQRERDPNKRELRPYGTAAALFVQM 140
Query: 135 GAYRGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGNPSPRPVRTKAYKMLPDWGYG 194
GAYRGGPRTFA+VGLASKP HVFSNPYFKCEWLPN AG P PVRTKAYKMLPDWGYG
Sbjct: 141 GAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAP---PVRTKAYKMLPDWGYG 197
Query: 195 RVYTVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRRYERFVALEEAPGSYDESRFSPPF 254
RVYTVVVVNCTFPSNPNADN GGKLLVHAYYST SRRYERFVALEEAPGSYD++RF PPF
Sbjct: 198 RVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVALEEAPGSYDDARFRPPF 257
Query: 255 PYDYLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHFVFHDAGGISPEVKAVLDPWVRAG 314
YDYLYCGSSLYGNLS++RMREW+AYHA FFGPRSHFV HDAGG++PEV+AVLDPWV AG
Sbjct: 258 AYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAGGVTPEVRAVLDPWVSAG 317
Query: 315 RLTVQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPNGQTLDQVLG 374
R+TVQDIRAQ +YDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLP+G+ L+ VL
Sbjct: 318 RVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPDGRALEDVLA 377
Query: 375 KLSGYSQFTIEQNPMSSKLCVQDPSKDYSREWGFEKLVFRNSITKVRRDRKYAIQARNAY 434
+L Y+QFTIEQNPMSSKLC+ DP++DYSREWGFEKLVFRNSIT VRRDRKYAIQARNAY
Sbjct: 378 QLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSITGVRRDRKYAIQARNAY 437
Query: 435 SAGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCREFVPVPVNGSKLMFEGIPYVY 494
S GVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCR+FVP P NGSK+MFEGIPYVY
Sbjct: 438 STGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVPKPANGSKVMFEGIPYVY 497
Query: 495 DDNMKRLAGQIKRFEKEAIGSAHT 518
DDNMKRLAG+I+RFEK+ IG HT
Sbjct: 498 DDNMKRLAGEIRRFEKQTIGDVHT 521
>Os06g0624700 Protein of unknown function DUF23 family protein
Length = 489
Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust.
Identities = 286/406 (70%), Positives = 335/406 (82%), Gaps = 6/406 (1%)
Query: 115 DPNKRELRPYGSAAALFVQMGAYRGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGN 174
DPN+RE R GSAAALFVQMGAYRGGP TFA++GLASKPTHV+ P+F+CEW+PN
Sbjct: 80 DPNRREFRAVGSAAALFVQMGAYRGGPYTFAVIGLASKPTHVYGKPWFRCEWVPNANGSA 139
Query: 175 PSPRPVRT---KAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRR 231
+ Y MLPDWGYGRVYTVVVVNCTF PNADNAGGKL+++AYY + R
Sbjct: 140 AAAAARPMRAANTYHMLPDWGYGRVYTVVVVNCTFARVPNADNAGGKLVLNAYYGASPAR 199
Query: 232 YERFVALEEAPGSYDESRFSPPFPYDYLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHF 291
YER VA+EEAPG+YD + F PP YDYLYCGSSLYGNLSA+R+REW+AYHA FFG RSHF
Sbjct: 200 YERIVAMEEAPGAYDAAEFRPPHRYDYLYCGSSLYGNLSAARVREWMAYHARFFGLRSHF 259
Query: 292 VFHDAGGISPEVKAVLDPWVRAGRLTVQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANW 351
VFHDAGG+SP V+A L+PWVRAGR T+QD+RAQAEYDG+YYNQFLVVNDCLHRYRHAA W
Sbjct: 260 VFHDAGGVSPAVRAALEPWVRAGRATLQDVRAQAEYDGWYYNQFLVVNDCLHRYRHAARW 319
Query: 352 TFFFDVDEYIYLPNGQTLDQVLGKLSGYSQFTIEQNPMSSKLCVQDPSK---DYSREWGF 408
TFFFDVDEYI+LP+G++L+ VL +L Y+QFTIEQNPMSS+LC ++P + DYS EWGF
Sbjct: 320 TFFFDVDEYIFLPDGRSLEAVLAELEPYTQFTIEQNPMSSRLCARNPDEPETDYSNEWGF 379
Query: 409 EKLVFRNSITKVRRDRKYAIQARNAYSAGVHMSQNVYGRTTHKTESLIRYYHYHNSINVM 468
EKLVFRNSIT VRRDRKYAIQA+NAY+ GVHMS+NV G TTHKTE LIRYYHYHN+INV+
Sbjct: 380 EKLVFRNSITGVRRDRKYAIQAKNAYATGVHMSENVIGNTTHKTEHLIRYYHYHNTINVI 439
Query: 469 GEPCREFVPVPVNGSKLMFEGIPYVYDDNMKRLAGQIKRFEKEAIG 514
GE CREFVP+P NG + E P+ YDD+MKR+A ++ FE++ IG
Sbjct: 440 GEVCREFVPIPPNGGLIWSEKTPWYYDDSMKRIADTVREFERKTIG 485
>AK111115
Length = 119
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/46 (86%), Positives = 40/46 (86%)
Query: 1 MKNGARKDAXXXXXXVFVPCVDIKSFVLSLAFLTVFVALWQLQPYG 46
MKNGARKDA VFVPCVDIKSFVLSLAFLTVFVALWQLQPYG
Sbjct: 1 MKNGARKDAGGGGGGVFVPCVDIKSFVLSLAFLTVFVALWQLQPYG 46
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,987,692
Number of extensions: 741663
Number of successful extensions: 1327
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 4
Length of query: 518
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 413
Effective length of database: 11,553,331
Effective search space: 4771525703
Effective search space used: 4771525703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)