BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0708400 Os02g0708400|AK068408
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0708400 Tetratricopeptide-related region domain contai... 1285 0.0
Os02g0109800 Protein prenyltransferase domain containing pr... 657 0.0
Os02g0820300 Protein prenyltransferase domain containing pr... 129 1e-29
Os03g0149400 Protein prenyltransferase domain containing pr... 98 2e-20
>Os02g0708400 Tetratricopeptide-related region domain containing protein
Length = 711
Score = 1285 bits (3326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 635/711 (89%), Positives = 635/711 (89%)
Query: 1 MPGIIVDGVVTEEAQNEVNSSQNKDNSSAPRSPVASKSMHSEALEMHVEGSGAGEPSIEQ 60
MPGIIVDGVVTEEAQNEVNSSQNKDNSSAPRSPVASKSMHSEALEMHVEGSGAGEPSIEQ
Sbjct: 1 MPGIIVDGVVTEEAQNEVNSSQNKDNSSAPRSPVASKSMHSEALEMHVEGSGAGEPSIEQ 60
Query: 61 LYNNVCEMXXXXXXXXXXXXXXXXDGEESRIDSELRHLVAXXXXXXXXXXXXXXXXXXXX 120
LYNNVCEM DGEESRIDSELRHLVA
Sbjct: 61 LYNNVCEMESSSEGGSPSRESFGSDGEESRIDSELRHLVAGEMEAMKVIEEEEGEGSGNA 120
Query: 121 XXXXTAAENGTPVXXXXXXXXXXXXXXXXXXXXXXXXXVGPNGKASTEEGEAEVSKPGSR 180
TAAENGTPV VGPNGKASTEEGEAEVSKPGSR
Sbjct: 121 ANAVTAAENGTPVKAMSSNSSKKSSKKAAKSQLESESSVGPNGKASTEEGEAEVSKPGSR 180
Query: 181 VGRRRKASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCA 240
VGRRRKASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCA
Sbjct: 181 VGRRRKASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCA 240
Query: 241 GGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPVIEEGQEHALAKFSGCMQLGD 300
GGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPVIEEGQEHALAKFSGCMQLGD
Sbjct: 241 GGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPVIEEGQEHALAKFSGCMQLGD 300
Query: 301 TYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKA 360
TYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKA
Sbjct: 301 TYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKA 360
Query: 361 LDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQETEVASVDC 420
LDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQETEVASVDC
Sbjct: 361 LDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQETEVASVDC 420
Query: 421 SIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSY 480
SIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSY
Sbjct: 421 SIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSY 480
Query: 481 CENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHEXXXXXXXXXXXMYNNSAGQQST 540
CENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHE MYNNSAGQQST
Sbjct: 481 CENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGQQST 540
Query: 541 IAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSI 600
IAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSI
Sbjct: 541 IAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSI 600
Query: 601 NEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKL 660
NEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKL
Sbjct: 601 NEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKL 660
Query: 661 GTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNPYTVTKRGTVAA 711
GTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNPYTVTKRGTVAA
Sbjct: 661 GTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNPYTVTKRGTVAA 711
>Os02g0109800 Protein prenyltransferase domain containing protein
Length = 599
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/545 (59%), Positives = 412/545 (75%), Gaps = 27/545 (4%)
Query: 185 RKASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASD---NPRRALKYALRATKSFEKCAG 241
RK + P T++A L+NPDLGPFLLK ARD + S RAL++A RA ++ E+
Sbjct: 45 RKVAAQPE--TDEAALDNPDLGPFLLKQARDAMVSGEGGGAARALEFAERAARALERRGE 102
Query: 242 GKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPVI-------------------- 281
G L L MSLHV AAI+C LG++ +A+PVL+R++ +
Sbjct: 103 G-AELELAMSLHVAAAIHCGLGRHADAIPVLERAVAVVTPPPPPPPPEGESSAEEQPPED 161
Query: 282 -EEGQEHALAKFSGCMQLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYL 340
++G+E ALA FSG MQLGDT+ MLG+ S+ Y GLEIQ LGE+DPRV ETCRYL
Sbjct: 162 QQKGEEWALAAFSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYL 221
Query: 341 AEAHVQALQLDEAQRLCQKALDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLV 400
AEAHVQALQ DEA++LC+KAL+IHRE+ PASLEE +DRRLM LI D KGD++ ALEHLV
Sbjct: 222 AEAHVQALQFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLV 281
Query: 401 MASMAMVANGQETEVASVDCSIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASV 460
+ASM MVANG++ EVA++D +IG+ YL+L R+DEAVFSYQKALTV K+++G++H +VASV
Sbjct: 282 LASMTMVANGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVASV 341
Query: 461 FVRLADLYNKTGKLRESKSYCENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHEXX 520
FVRLADLY++TG+LRESKSYCENAL++Y KP PG + +E+A GL +++AIYE + + +
Sbjct: 342 FVRLADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDEA 401
Query: 521 XXXXXXXXXMYNNSAGQQSTIAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKT 580
+ +S GQ ST+AGIEAQMGVL+Y++G Y ++ +SF++A+AKLR GE+K+
Sbjct: 402 LKLLQRALKLLEDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKS 461
Query: 581 AFFGVALNQMGLACVQRYSINEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMG 640
AFFGV LNQMGLACVQ + I+EAA+LFEEARAVLEQE G HPDTLGVYSNLA YDAMG
Sbjct: 462 AFFGVLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMG 521
Query: 641 RLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNP 700
R+++AIEILEHV+ +REEKLGTANPDV+DEK RLAELLKEAGR R+RK KSLENL TN
Sbjct: 522 RVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSLENLFVTNS 581
Query: 701 YTVTK 705
V K
Sbjct: 582 QRVKK 586
>Os02g0820300 Protein prenyltransferase domain containing protein
Length = 621
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 36/461 (7%)
Query: 221 NPRRALKYALRATKSFE--------KCAGGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVL 272
+P R L ALR+ E A +++L M+LH+ + +L ++ +A+ L
Sbjct: 110 DPSRVLALALRSLGILEATPNSATSTTASHSDAVSLAMALHLAGSASFDLSRFHDALSFL 169
Query: 273 QRSLEI--PVI--------------EEGQEHALAKFSGCMQLGDTYGMLGQTALSLQWYA 316
RSL + P++ +G + + +QL + LG+ +L
Sbjct: 170 TRSLRLVSPLLPSSSSAAAASGDDDAQGFDVRPVAHAVRLQLANVKTALGRREEALADMR 229
Query: 317 AGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEET 376
A L++++ L +G R LAEA+ L EA LC+KAL++H+ S+E
Sbjct: 230 ACLDLKESILPPGSRELGAAYRDLAEAYSTVLDFKEALPLCEKALELHQSTLGKNSVEVA 289
Query: 377 ADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQE-TEVASVDCSIGDIYLSLGRYDEA 435
DRRL+G+I HE AL+ M+ M + G E+ + +I ++LG+ DEA
Sbjct: 290 HDRRLLGVIYTGLEQHEQALQQNEMSQKVMKSWGVAGDELLHAEIDAANIKIALGKCDEA 349
Query: 436 VFSYQKALTVFK--TSKGENHATV-ASVFVRLADLYNKTGKLRESKSYCENALKIYQKPI 492
V TV + + + E + + A VF+ +A K ++K E A I +K
Sbjct: 350 V-------TVLRNVSKQVEKDSEIRALVFISMAKALANQEKAGDTKRCLEIACDILEKKE 402
Query: 493 PGTSLEEIATGLTDVSAIYETMNEHEXXXXXXXXXXXMYNNSAGQQSTIAGIEAQMGVLH 552
+++A +VS++YE +NE + M Q + A++G L
Sbjct: 403 LAAP-DKVAEAYVEVSSLYEMVNEFDKAISLLKRSLGMLERIPQAQHMEGNVAARIGWLL 461
Query: 553 YILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSINEAAELFEEARA 612
+ G EA + A+ +++ K G N +G A ++ AA++F A+
Sbjct: 462 LLTGKVSEAVPYLEDAVERMKDSFGPKHYGVGYVYNNLGAAYMEIGRPQSAAQMFALAKE 521
Query: 613 VLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVV 653
V++ GP+H DT+ +LA Y+AMG A+E + VV
Sbjct: 522 VMDVSLGPHHSDTIEACQSLANAYNAMGSYALAMEFQKRVV 562
>Os03g0149400 Protein prenyltransferase domain containing protein
Length = 498
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 158/370 (42%), Gaps = 12/370 (3%)
Query: 318 GLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKALDIHRENGEPASLEETA 377
+E++ L + +G + +AEA+ L D+A LC +AL+I R + S E
Sbjct: 119 AMELKAVFLEKGSLELGNAYKDVAEAYRGVLACDKALPLCLEALEIARNHFGGDSQEVAK 178
Query: 378 DRRLMGLICDTKGDHEAALEHLVMASMAMVANGQETEVASVDCSIGDIYLSLGRYDEAVF 437
R+L+ I G +E ALE + M G + E++ + + + + LGR +EA+
Sbjct: 179 VRQLLATIYAGSGRNEEALEQYEIVRMVYERLGLDVELSLAETDVAMVLVLLGRSEEAMD 238
Query: 438 SYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSYCENALKIYQKPIPGTSL 497
++ + G+ A FV +A++ + +SK E A +I I + L
Sbjct: 239 VLKRVIN----RAGKESEERALAFVAMANILCIQDRKADSKRCLEIAREILDTKISVSPL 294
Query: 498 EEIATGLTDVSAIYETMNEHEXXXXXXXXXXXMYNNSAGQQSTIAGIEAQMGVLHYILGN 557
+ +A ++S +YETM E E + + Q I A+MG L
Sbjct: 295 Q-VAQVYAEMSMLYETMIEFEVALCLMKKTLVFLDGVSEMQHIQGSISARMGWLLLKTER 353
Query: 558 YGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSINEAAELFEEARAVLEQE 617
EA +SAI KL+ C G A +G A + A + F A+ ++
Sbjct: 354 VDEAVPYLQSAIEKLKNCFGPLHFGLGFAYKHLGDAYLAMNQSESAIKYFTIAKDIINAT 413
Query: 618 YGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKR---RL 674
YGP H DT+ ++A Y MG +A++ E V+ E + P +E R RL
Sbjct: 414 YGPKHEDTIDTIQSIANAYGVMGSYKQAMDYQEQVIDAYE----SCGPGAFEELREAQRL 469
Query: 675 AELLKEAGRG 684
LK RG
Sbjct: 470 RYQLKIKARG 479
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,476,839
Number of extensions: 792749
Number of successful extensions: 2046
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2002
Number of HSP's successfully gapped: 4
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)