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Os03g0149400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.44 (0.0351) R2 : 0.672
β1 : 2.45 (0.129) R2dD : 0.267 R2D : 0.245
β2 : 3.22 (0.147) R2dC : 0.897 R2C : 0.185
β3 : 2.59 (0.239) R2dE : 0.222 R2E : -0.463
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.326 (0.0771) R2dN8 : 0.0209 R2N8 : -0.0314
σ : 0.656
deviance : 198.63
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C
peak time of C : 18.4
E
wheather : radiation
threshold : 7.447
memory length : 1195
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.11 0.661 6.38 2.69 2.58 2.05 -0.193 -2.77 0.473 17.9 10.97 1237 13.8 --
201.73 0.662 6.4 2.44 2.6 2.13 0.388 -- 0.368 18 7.653 1212 13.2 --
195.81 0.652 6.38 2.6 2.82 2.31 -- -2.14 0.442 18 9.957 1216 12.8 --
198.63 0.656 6.44 2.45 3.22 2.59 -- -- 0.326 18.4 7.447 1195 11 --
264.7 0.762 6.39 2.43 -- 1.98 -- 0.215 0.176 -- 157.7 1539 12.1 --
243.7 0.732 6.43 2.44 2.01 -- 0.703 -- 0.171 17.7 -- -- -- --
244.87 0.733 6.43 2.44 2.01 -- -- -- 0.174 17.8 -- -- -- --
226.84 0.701 6.37 2.5 -- 2.68 -- -- 0.346 -- 268.9 1639 14 --
348.77 0.87 6.46 -- 3.27 2.98 -- -- 0.211 18.5 10 1230 10.7 --
455.39 0.997 6.4 2.37 -- -- -- -- 0.127 -- -- -- -- --
401.4 0.937 6.49 -- 1.98 -- -- -- -0.0975 17.9 -- -- -- --
391.08 0.921 6.42 -- -- 2.5 -- -- 0.0501 -- 278.9 1705 14.4 --
604.16 1.15 6.46 -- -- -- -- -- -0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.48 temperature 10.0 270 > th dose dependent rect. 7 7
7 197.92 temperature 20.0 10 > th dose dependent rect. 9 7
74 204.15 temperature 20.0 270 > th dose independent rect. 7 7
82 204.34 wind 9.0 270 < th dose dependent rect. 7 8
98 205.20 wind 7.0 270 < th dose independent rect. 7 8
103 205.42 atmosphere 1010.0 270 < th dose independent rect. 14 17
125 206.51 temperature 25.0 90 > th dose independent rect. 9 6
126 206.53 temperature 15.0 270 > th dose independent rect. 14 17
128 206.53 temperature 10.0 270 > th dose dependent rect. 15 16
134 206.69 radiation 40.0 270 < th dose independent rect. 14 17
135 206.73 precipitation 0.1 270 < th dose independent rect. 15 16
137 206.73 precipitation 0.1 270 < th dose dependent rect. 15 16
140 206.80 precipitation 0.1 270 < th dose independent rect. 7 8
142 206.80 precipitation 0.1 270 < th dose dependent rect. 7 8
147 207.01 radiation 10.0 1440 < th dose independent rect. 14 3
152 207.18 temperature 10.0 270 > th dose independent rect. 7 7
153 207.18 atmosphere 995.0 270 > th dose independent rect. 7 7
154 207.18 atmosphere 1015.0 270 < th dose independent rect. 7 7
163 207.28 radiation 30.0 270 < th dose independent rect. 1 8
176 207.74 temperature 30.0 270 < th dose dependent rect. 20 6
179 207.78 precipitation 0.1 270 < th dose independent rect. 1 8
180 207.78 precipitation 0.1 270 < th dose dependent rect. 1 8
181 207.80 wind 9.0 270 < th dose independent rect. 14 17
186 207.89 temperature 30.0 270 < th dose dependent rect. 19 8
190 208.15 radiation 1.0 270 > th dose independent rect. 7 7
204 208.27 radiation 40.0 90 < th dose dependent rect. 15 18
210 208.40 wind 9.0 270 < th dose independent rect. 9 16
214 208.43 radiation 10.0 1440 < th dose dependent rect. 10 8
216 208.45 radiation 10.0 1440 < th dose dependent rect. 10 17
219 208.46 radiation 10.0 1440 < th dose dependent rect. 10 19
225 208.52 radiation 40.0 270 < th dose dependent rect. 1 8
227 208.55 wind 7.0 270 < th dose independent rect. 1 8
228 208.55 humidity 50.0 270 > th dose dependent rect. 19 7
231 208.64 temperature 30.0 270 < th dose independent rect. 1 8
240 208.69 radiation 10.0 1440 < th dose dependent rect. 10 12
252 208.78 atmosphere 1010.0 270 < th dose independent rect. 13 8
300 209.17 atmosphere 1000.0 270 > th dose independent rect. 19 7
306 209.28 temperature 30.0 270 < th dose dependent rect. 21 4
309 209.32 precipitation 0.1 270 < th dose independent rect. 2 17
311 209.32 atmosphere 995.0 270 > th dose dependent rect. 19 7
312 209.32 precipitation 0.1 270 < th dose dependent rect. 2 17
321 209.36 temperature 15.0 270 > th dose dependent rect. 1 6
326 209.43 humidity 60.0 270 > th dose independent rect. 1 8
328 209.44 temperature 10.0 270 > th dose independent rect. 1 8
331 209.44 atmosphere 995.0 270 > th dose independent rect. 1 8
332 209.44 atmosphere 1015.0 270 < th dose independent rect. 1 8
333 209.44 temperature 10.0 270 > th dose independent rect. 9 16
344 209.57 temperature 25.0 720 > th dose dependent rect. 18 10
346 209.59 temperature 25.0 720 > th dose dependent rect. 18 12
350 209.63 wind 9.0 270 < th dose independent rect. 19 7
351 209.63 atmosphere 995.0 270 > th dose independent rect. 14 17
357 209.69 temperature 10.0 270 > th dose independent rect. 19 7
358 209.69 temperature 30.0 270 < th dose independent rect. 19 7
359 209.69 humidity 50.0 270 > th dose independent rect. 19 7
361 209.69 radiation 1.0 270 < th dose independent rect. 19 7
366 209.69 temperature 10.0 270 > th dose independent rect. 2 17
367 209.69 atmosphere 1015.0 270 < th dose independent rect. 2 17
368 209.69 radiation 1.0 270 < th dose dependent rect. 19 7
377 209.77 atmosphere 1000.0 270 > th dose dependent rect. 24 8
393 209.91 precipitation 0.1 270 < th dose independent rect. 9 16
394 209.91 precipitation 0.1 270 < th dose dependent rect. 9 16
405 209.99 precipitation 0.1 270 < th dose independent rect. 19 7
406 209.99 precipitation 0.1 270 < th dose dependent rect. 19 7
414 210.03 radiation 10.0 1440 < th dose dependent sin 18 NA
427 210.15 atmosphere 1005.0 270 > th dose independent rect. 1 7
440 210.21 humidity 90.0 720 > th dose dependent rect. 21 3
451 210.28 humidity 50.0 270 > th dose independent rect. 7 7
457 210.33 radiation 10.0 1440 < th dose independent rect. 13 14
500 210.45 wind 7.0 270 < th dose independent rect. 21 16
522 210.52 radiation 10.0 1440 < th dose independent rect. 13 9
531 210.55 wind 1.0 270 > th dose independent rect. 7 7
583 210.77 temperature 20.0 30 > th dose independent rect. 16 17
608 210.86 temperature 25.0 720 < th dose independent rect. 18 5
621 210.98 precipitation 0.1 90 < th dose independent rect. 9 6
624 210.98 precipitation 0.1 90 < th dose dependent rect. 9 6
657 211.13 wind 9.0 270 < th dose independent rect. 2 17
674 211.21 temperature 25.0 10 > th dose independent rect. 9 7
679 211.24 atmosphere 1015.0 10 < th dose independent rect. 16 17
688 211.30 wind 1.0 270 > th dose independent rect. 2 17
692 211.34 radiation 1.0 90 > th dose independent rect. 9 6
696 211.34 temperature 10.0 10 > th dose dependent rect. 9 17
701 211.37 temperature 30.0 10 < th dose dependent rect. 22 6
707 211.42 temperature 10.0 90 > th dose independent rect. 9 6
708 211.42 atmosphere 1015.0 90 < th dose independent rect. 9 6
725 211.49 humidity 50.0 270 > th dose independent rect. 14 17
728 211.52 atmosphere 1005.0 10 > th dose independent rect. 2 8
736 211.56 temperature 10.0 90 > th dose dependent rect. 9 16
737 211.57 wind 1.0 270 > th dose independent rect. 19 7
744 211.57 temperature 10.0 10 > th dose dependent rect. 16 17
752 211.61 temperature 15.0 270 > th dose independent rect. 13 8
768 211.66 temperature 15.0 270 > th dose independent rect. 21 16
783 211.74 temperature 10.0 43200 > th dose independent rect. 10 6
794 211.78 temperature 25.0 90 > th dose dependent rect. 4 11
804 211.82 atmosphere 995.0 270 > th dose independent rect. 21 16
805 211.82 atmosphere 995.0 270 > th dose independent rect. 2 17
861 211.98 radiation 1.0 10 > th dose independent rect. 9 7
884 212.04 temperature 30.0 10 < th dose dependent rect. 22 8
897 212.08 radiation 10.0 1440 < th dose independent sin 16 NA
919 212.15 wind 7.0 10 < th dose independent rect. 9 7
953 212.26 temperature 30.0 720 < th dose dependent rect. 18 1
970 212.32 wind 1.0 270 > th dose independent rect. 13 8
975 212.34 temperature 30.0 270 < th dose dependent rect. 23 1
981 212.36 radiation 10.0 1440 > th dose independent rect. 11 7