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Os02g0109800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0148) R2 : 0.538
β1 : 1.1 (0.0542) R2dD : 0.431 R2D : 0.246
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.464 (0.0316) R2dN8 : 0.293 R2N8 : 0.108
σ : 0.278
deviance : 35.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.09 0.226 10.7 0.757 0.322 -0.142 0.47 1.2 0.362 2.73 1011 3440 -- --
26.94 0.242 10.7 0.892 0.324 -0.298 0.325 -- 0.376 2.68 1010 39905 -- --
23.81 0.227 10.7 0.734 0.33 -0.14 -- 1.2 0.353 2.78 1011 3877 -- --
27.28 0.243 10.7 0.884 0.328 -0.314 -- -- 0.376 2.84 1010 39906 -- --
29.9 0.255 10.7 0.767 -- -0.182 -- 1.12 0.37 -- 1011 3419 -- --
28.65 0.251 10.7 1.09 0.329 -- 0.337 -- 0.458 2.72 -- -- -- --
29.04 0.252 10.7 1.08 0.331 -- -- -- 0.456 2.83 -- -- -- --
33.35 0.269 10.7 0.877 -- -0.341 -- -- 0.379 -- 1010 39944 -- --
36.32 0.281 10.7 -- 0.325 -0.794 -- -- 0.138 2.86 1014 47520 -- --
35.38 0.278 10.7 1.1 -- -- -- -- 0.464 -- -- -- -- --
60.01 0.362 10.7 -- 0.352 -- -- -- 0.335 2.86 -- -- -- --
37.64 0.286 10.7 -- -- -0.911 -- -- 0.0961 -- 1016 44130 -- --
67.19 0.383 10.7 -- -- -- -- -- 0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.61 wind 3 43200 < th dose dependent rect. 20 1
2 21.66 wind 1 43200 > th dose independent rect. 24 1
3 21.91 humidity 80 43200 > th dose independent rect. 18 7
4 21.94 humidity 80 43200 > th dose independent rect. 19 5
5 21.94 humidity 90 43200 < th dose dependent rect. 20 1
6 21.95 humidity 80 43200 < th dose dependent rect. 19 20
9 21.96 humidity 70 43200 > th dose independent rect. 19 19
10 21.96 humidity 80 43200 < th dose dependent rect. 18 6
12 21.97 wind 3 43200 > th dose independent rect. 13 1
13 21.97 humidity 70 43200 < th dose independent rect. 19 19
15 21.97 humidity 70 43200 < th dose independent rect. 19 22
25 21.99 humidity 70 43200 > th dose independent rect. 19 22
26 21.99 wind 5 43200 < th dose dependent rect. 14 1
30 21.99 humidity 80 43200 < th dose dependent rect. 17 8
33 21.99 humidity 80 43200 < th dose dependent rect. 10 21
40 22.00 wind 1 43200 < th dose independent rect. 24 1
46 22.00 humidity 80 43200 < th dose dependent rect. 10 19
62 22.01 humidity 80 43200 < th dose dependent no NA NA
63 22.01 wind 1 43200 < th dose dependent rect. 11 1
65 22.01 humidity 80 43200 < th dose dependent rect. 10 17
72 22.01 humidity 80 43200 < th dose dependent rect. 4 22
81 22.02 wind 1 43200 < th dose dependent rect. 11 15
95 22.02 humidity 80 43200 < th dose dependent rect. 1 23
101 22.03 humidity 70 43200 > th dose independent sin 5 NA
122 22.03 humidity 80 43200 < th dose dependent rect. 23 23
124 22.04 humidity 80 43200 < th dose independent rect. 18 7
127 22.04 humidity 70 43200 > th dose independent rect. 15 22
131 22.04 humidity 80 43200 < th dose dependent sin 14 NA
144 22.05 humidity 70 43200 > th dose independent rect. 23 15
166 22.06 humidity 70 43200 < th dose independent sin 5 NA
226 22.08 humidity 70 43200 > th dose independent rect. 3 22
232 22.08 humidity 80 43200 < th dose dependent rect. 10 1
252 22.09 humidity 70 43200 > th dose independent rect. 12 23
254 22.09 humidity 80 43200 < th dose dependent sin 4 NA
268 22.10 humidity 70 43200 > th dose independent no NA NA
269 22.10 humidity 80 43200 > th dose independent rect. 20 3
281 22.10 humidity 70 43200 > th dose independent rect. 23 23
284 22.10 humidity 80 43200 < th dose dependent rect. 10 3
285 22.10 humidity 80 43200 < th dose dependent rect. 3 12
292 22.11 wind 3 43200 < th dose independent rect. 13 1
293 22.11 radiation 1 43200 > th dose independent rect. 7 1
294 22.11 radiation 1 43200 < th dose independent rect. 7 1
313 22.11 humidity 70 43200 < th dose independent rect. 12 23
314 22.11 humidity 70 43200 < th dose independent rect. 15 23
351 22.12 humidity 70 43200 > th dose independent rect. 10 23
368 22.13 humidity 70 43200 < th dose independent no NA NA
378 22.13 humidity 70 43200 < th dose independent rect. 3 23
379 22.13 humidity 70 43200 < th dose independent rect. 10 23
382 22.13 wind 1 43200 > th dose dependent rect. 14 2
440 22.15 humidity 70 43200 > th dose independent rect. 23 18
491 22.16 humidity 70 43200 < th dose independent rect. 22 23
533 22.17 wind 9 43200 > th dose dependent rect. 19 2
542 22.18 radiation 1 14400 > th dose independent rect. 18 1
630 22.20 atmosphere 995 43200 < th dose dependent rect. 15 3
638 22.21 atmosphere 995 43200 > th dose independent rect. 14 4
665 22.22 atmosphere 995 43200 < th dose independent rect. 15 1
667 22.22 atmosphere 995 43200 < th dose independent rect. 14 5
683 22.22 wind 1 43200 < th dose dependent rect. 4 1
686 22.22 wind 7 43200 < th dose dependent rect. 14 7
745 22.25 humidity 80 43200 < th dose independent rect. 16 18
762 22.26 atmosphere 995 43200 > th dose independent rect. 15 2
776 22.26 humidity 50 43200 > th dose dependent rect. 19 2
788 22.27 humidity 70 43200 > th dose independent sin 16 NA
790 22.27 humidity 70 43200 > th dose independent rect. 10 1
793 22.27 humidity 70 43200 > th dose independent rect. 15 10
819 22.28 humidity 70 43200 < th dose independent sin 16 NA
820 22.28 wind 1 43200 > th dose independent rect. 2 1
836 22.28 wind 1 43200 > th dose dependent rect. 14 7
847 22.29 temperature 20 43200 < th dose independent rect. 24 1
908 22.31 humidity 80 43200 > th dose independent sin 13 NA
912 22.31 temperature 20 43200 > th dose independent rect. 24 1
987 22.33 wind 3 43200 < th dose independent rect. 20 1
988 22.33 humidity 70 43200 < th dose independent rect. 10 1
993 22.33 radiation 1 43200 < th dose independent rect. 18 11