BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0109800 Os02g0109800|AK069014
(599 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0109800 Protein prenyltransferase domain containing pr... 945 0.0
Os02g0708400 Tetratricopeptide-related region domain contai... 604 e-173
Os02g0820300 Protein prenyltransferase domain containing pr... 128 9e-30
Os03g0149400 Protein prenyltransferase domain containing pr... 77 5e-14
>Os02g0109800 Protein prenyltransferase domain containing protein
Length = 599
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/554 (85%), Positives = 476/554 (85%)
Query: 46 KVAAQPETDEAALDNPDLGPFLLKQARDAMVSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 105
KVAAQPETDEAALDNPDLGPFLLKQARDAMVS
Sbjct: 46 KVAAQPETDEAALDNPDLGPFLLKQARDAMVSGEGGGAARALEFAERAARALERRGEGAE 105
Query: 106 XXXXMSLHVAAAIHCGLGRHADAIPVLERAVAVVTXXXXXXXXXXXXXXXXXXXXDQQKG 165
MSLHVAAAIHCGLGRHADAIPVLERAVAVVT DQQKG
Sbjct: 106 LELAMSLHVAAAIHCGLGRHADAIPVLERAVAVVTPPPPPPPPEGESSAEEQPPEDQQKG 165
Query: 166 EEWALAAFSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYLAEAH 225
EEWALAAFSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYLAEAH
Sbjct: 166 EEWALAAFSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYLAEAH 225
Query: 226 VQALQFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLVLASM 285
VQALQFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLVLASM
Sbjct: 226 VQALQFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLVLASM 285
Query: 286 TMVANGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVASVFVRL 345
TMVANGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVASVFVRL
Sbjct: 286 TMVANGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVASVFVRL 345
Query: 346 ADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDEXXXXX 405
ADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDE
Sbjct: 346 ADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDEALKLL 405
Query: 406 XXXXXXXEDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKSAFFG 465
EDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKSAFFG
Sbjct: 406 QRALKLLEDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKSAFFG 465
Query: 466 VLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRVED 525
VLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRVED
Sbjct: 466 VLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRVED 525
Query: 526 AIEILEHVLKVREEKLGTANPDVXXXXXXXXXXXXXXGRSRNRKQKSLENLFVTNSQRVK 585
AIEILEHVLKVREEKLGTANPDV GRSRNRKQKSLENLFVTNSQRVK
Sbjct: 526 AIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSLENLFVTNSQRVK 585
Query: 586 KDAGRRWSNFGFRS 599
KDAGRRWSNFGFRS
Sbjct: 586 KDAGRRWSNFGFRS 599
>Os02g0708400 Tetratricopeptide-related region domain containing protein
Length = 711
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/534 (56%), Positives = 380/534 (71%), Gaps = 23/534 (4%)
Query: 53 TDEAALDNPDLGPFLLKQARDAMVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSL 112
T++A L+NPDLGPFLLK ARD + S MSL
Sbjct: 195 TEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCAGGKPSLNLV--MSL 252
Query: 113 HVAAAIHCGLGRHADAIPVLERAVAVVTXXXXXXXXXXXXXXXXXXXXDQQKGEEWALAA 172
HV AAI+C LG++ +A+PVL+R++ + ++G+E ALA
Sbjct: 253 HVVAAIYCNLGKYDEAVPVLQRSLEIPVI---------------------EEGQEHALAK 291
Query: 173 FSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYLAEAHVQALQFD 232
FSG MQLGDT+ MLG+ S+ Y GLEIQ LGE+DPRV ETCRYLAEAHVQALQ D
Sbjct: 292 FSGCMQLGDTYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLD 351
Query: 233 EAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLVLASMTMVANGR 292
EA++LC+KAL+IHRE+ PASLEE +DRRLM LI D KGD++ ALEHLV+ASM MVANG+
Sbjct: 352 EAQRLCQKALDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQ 411
Query: 293 DIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVASVFVRLADLYHRT 352
+ EVA++D +IG+ YL+L R+DEAVFSYQKALTV K+++G++H +VASVFVRLADLY++T
Sbjct: 412 ETEVASVDCSIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKT 471
Query: 353 GRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDEXXXXXXXXXXXX 412
G+LRESKSYCENAL++Y KP PG + +E+A GL +++AIYE + + ++
Sbjct: 472 GKLRESKSYCENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHEQALKLLQKALKMY 531
Query: 413 EDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKSAFFGVLLNQMG 472
+S GQ ST+AGIEAQMGVL+Y++G Y ++ +SF++A+AKLR GE+K+AFFGV LNQMG
Sbjct: 532 NNSAGQQSTIAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMG 591
Query: 473 LACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRVEDAIEILEH 532
LACVQ + I+EAA+LFEEARAVLEQE G HPDTLGVYSNLA YDAMGR+++AIEILEH
Sbjct: 592 LACVQRYSINEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEH 651
Query: 533 VLKVREEKLGTANPDVXXXXXXXXXXXXXXGRSRNRKQKSLENLFVTNSQRVKK 586
V+ +REEKLGTANPDV GR R+RK KSLENL TN V K
Sbjct: 652 VVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNPYTVTK 705
>Os02g0820300 Protein prenyltransferase domain containing protein
Length = 621
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 199/431 (46%), Gaps = 21/431 (4%)
Query: 110 MSLHVAAAIHCGLGRHADAIPVLERAVAVVTXXXXXXXXXXXXXXXXXXXXDQQKGEEWA 169
M+LH+A + L R DA+ L R++ +V+ +G +
Sbjct: 147 MALHLAGSASFDLSRFHDALSFLTRSLRLVSPLLPSSSSAAAASGDD-----DAQGFDVR 201
Query: 170 LAAFSGWMQLGDTHAMLGRMDESIACYGKGLEIQMAALGERDPRVAETCRYLAEAHVQAL 229
A + +QL + LGR +E++A L+++ + L + R LAEA+ L
Sbjct: 202 PVAHAVRLQLANVKTALGRREEALADMRACLDLKESILPPGSRELGAAYRDLAEAYSTVL 261
Query: 230 QFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHLVLASMTMVA 289
F EA LC KALE+H+ S+E A DRRL+ +I ++ AL+ ++ M +
Sbjct: 262 DFKEALPLCEKALELHQSTLGKNSVEVAHDRRLLGVIYTGLEQHEQALQQNEMSQKVMKS 321
Query: 290 ---NGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGD---DHPSVASVFV 343
G ++ A ID A N +AL + DEAV TVL++ D A VF+
Sbjct: 322 WGVAGDELLHAEIDAA--NIKIALGKCDEAV-------TVLRNVSKQVEKDSEIRALVFI 372
Query: 344 RLADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDEXXX 403
+A + ++K E A + K AAPD+VA +E++++YE + + D+
Sbjct: 373 SMAKALANQEKAGDTKRCLEIACDILEK-KELAAPDKVAEAYVEVSSLYEMVNEFDKAIS 431
Query: 404 XXXXXXXXXEDSPGQWSTVAGIEAQMGVLYYMVGRYADSRNSFENAVAKLRASGERKSAF 463
E P + A++G L + G+ +++ E+AV +++ S K
Sbjct: 432 LLKRSLGMLERIPQAQHMEGNVAARIGWLLLLTGKVSEAVPYLEDAVERMKDSFGPKHYG 491
Query: 464 FGVLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDAMGRV 523
G + N +G A +++ + AAQ+F A+ V++ G H DT+ +LA Y+AMG
Sbjct: 492 VGYVYNNLGAAYMEIGRPQSAAQMFALAKEVMDVSLGPHHSDTIEACQSLANAYNAMGSY 551
Query: 524 EDAIEILEHVL 534
A+E + V+
Sbjct: 552 ALAMEFQKRVV 562
>Os03g0149400 Protein prenyltransferase domain containing protein
Length = 498
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 136/319 (42%), Gaps = 7/319 (2%)
Query: 221 LAEAHVQALQFDEAEKLCRKALEIHREHSAPASLEEASDRRLMALILDAKGDYDGALEHL 280
+AEA+ L D+A LC +ALEI R H S E A R+L+A I G + ALE
Sbjct: 141 VAEAYRGVLACDKALPLCLEALEIARNHFGGDSQEVAKVRQLLATIYAGSGRNEEALEQY 200
Query: 281 VLASMTMVANGRDIEVATIDVAIGNTYLALARFDEAVFSYQKALTVLKSARGDDHPSVAS 340
+ M G D+E++ + + + L R +EA+ ++ + + G + A
Sbjct: 201 EIVRMVYERLGLDVELSLAETDVAMVLVLLGRSEEAMDVLKRVI----NRAGKESEERAL 256
Query: 341 VFVRLADLYHRTGRLRESKSYCENALRVYAKPAPGAAPDEVAGGLMEIAAIYEALGDLDE 400
FV +A++ R +SK C R +P +VA E++ +YE + + E
Sbjct: 257 AFVAMANILCIQDRKADSKR-CLEIAREILDTKISVSPLQVAQVYAEMSMLYETMIEF-E 314
Query: 401 XXXXXXXXXXXXEDSPGQWSTVAG-IEAQMGVLYYMVGRYADSRNSFENAVAKLRASGER 459
D + + G I A+MG L R ++ ++A+ KL+
Sbjct: 315 VALCLMKKTLVFLDGVSEMQHIQGSISARMGWLLLKTERVDEAVPYLQSAIEKLKNCFGP 374
Query: 460 KSAFFGVLLNQMGLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVYSNLAAIYDA 519
G +G A + + + + A + F A+ ++ G H DT+ ++A Y
Sbjct: 375 LHFGLGFAYKHLGDAYLAMNQSESAIKYFTIAKDIINATYGPKHEDTIDTIQSIANAYGV 434
Query: 520 MGRVEDAIEILEHVLKVRE 538
MG + A++ E V+ E
Sbjct: 435 MGSYKQAMDYQEQVIDAYE 453
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,331,880
Number of extensions: 523385
Number of successful extensions: 1666
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 4
Length of query: 599
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 492
Effective length of database: 11,448,903
Effective search space: 5632860276
Effective search space used: 5632860276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)