Os02g0708400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-related region domain containing protein.
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Os02g0708400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-related region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.2 | 0.362 | 10.5 | -1.85 | 0.739 | 1.2 | 0.679 | -2.28 | -0.136 | 6.07 | 23.36 | 1267 | -- | -- |
| 61.22 | 0.364 | 10.5 | -1.23 | 0.748 | 1.05 | 0.765 | -- | -0.00592 | 6.06 | 21.52 | 1245 | -- | -- |
| 60.18 | 0.361 | 10.5 | -1.76 | 0.748 | 1.19 | -- | -1.9 | -0.137 | 6.21 | 22.7 | 1245 | -- | -- |
| 62.18 | 0.367 | 10.5 | -1.22 | 0.748 | 1.04 | -- | -- | -0.00179 | 6.16 | 21.74 | 1246 | -- | -- |
| 88.6 | 0.438 | 10.5 | -1.77 | -- | 1.24 | -- | -1.91 | -0.12 | -- | 22.97 | 1300 | -- | -- |
| 95.74 | 0.459 | 10.4 | -0.872 | 0.815 | -- | 0.811 | -- | 0.23 | 5.38 | -- | -- | -- | -- |
| 97.37 | 0.462 | 10.4 | -0.87 | 0.821 | -- | -- | -- | 0.226 | 5.44 | -- | -- | -- | -- |
| 90.57 | 0.443 | 10.5 | -1.22 | -- | 1.09 | -- | -- | 0.00118 | -- | 22.12 | 1296 | -- | -- |
| 97.84 | 0.461 | 10.4 | -- | 0.755 | 0.743 | -- | -- | 0.191 | 6.08 | 22.27 | 1223 | -- | -- |
| 132.45 | 0.538 | 10.4 | -0.843 | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
| 117.33 | 0.507 | 10.4 | -- | 0.807 | -- | -- | -- | 0.323 | 5.48 | -- | -- | -- | -- |
| 126.47 | 0.524 | 10.4 | -- | -- | 0.799 | -- | -- | 0.202 | -- | 22.69 | 1282 | -- | -- |
| 151.19 | 0.574 | 10.4 | -- | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 4 | 59.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 25 | 59.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 78 | 60.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 118 | 60.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 149 | 60.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 300 | 61.32 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 329 | 61.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 335 | 61.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 414 | 61.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 418 | 61.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 531 | 61.77 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 548 | 61.78 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 635 | 61.95 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 677 | 62.08 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 690 | 62.15 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 699 | 62.19 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 707 | 62.21 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 709 | 62.22 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 730 | 62.30 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 738 | 62.33 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 745 | 62.35 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 775 | 62.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 776 | 62.43 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 803 | 62.51 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 814 | 62.54 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 828 | 62.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 834 | 62.61 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 837 | 62.62 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 839 | 62.62 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 856 | 62.66 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 878 | 62.70 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 890 | 62.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 904 | 62.77 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 927 | 62.81 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 983 | 62.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 992 | 62.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 996 | 62.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |