BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0694700 Os02g0694700|AK106892
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0694700 RWD domain containing protein 639 0.0
Os04g0593700 RWD domain containing protein 228 5e-60
Os04g0594000 RWD domain containing protein 223 2e-58
>Os02g0694700 RWD domain containing protein
Length = 415
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/388 (82%), Positives = 320/388 (82%)
Query: 1 MMTPGSSSTSVPGDEADAGNWDAGVETAARLEAMVHAEDELSEEQIQANNQTQEDELLAL 60
MMTPGSSSTSVPGDEADAGNWDAGVETAARLEAMVHAEDELSEEQIQANNQTQEDELLAL
Sbjct: 1 MMTPGSSSTSVPGDEADAGNWDAGVETAARLEAMVHAEDELSEEQIQANNQTQEDELLAL 60
Query: 61 QAIYGDDLVIFDNKDGLRFFQISLHYQLAGDIRVYLNVCPNGRTETGAENXXXXXXXRLL 120
QAIYGDDLVIFDNKDGLRFFQISLHYQLAGDIRVYLNVCPNGRTETGAEN RLL
Sbjct: 61 QAIYGDDLVIFDNKDGLRFFQISLHYQLAGDIRVYLNVCPNGRTETGAENDDDDDSDRLL 120
Query: 121 YACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQE 180
YACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQE
Sbjct: 121 YACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQE 180
Query: 181 VVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGGDDRAIGRSCSLDSMIPLIQRYSKERS 240
VVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGGDDRAIGRSCSLDSMIPLIQRYSKERS
Sbjct: 181 VVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGGDDRAIGRSCSLDSMIPLIQRYSKERS 240
Query: 241 HEIFARRIHECGVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSC 300
HEIFARRIHECGVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSC
Sbjct: 241 HEIFARRIHECGVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSC 300
Query: 301 XXXXXXXXXXXXXXXXEYARWESLVLRGCWTRCXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
EYARWESLVLRGCWTRC
Sbjct: 301 RRPLPPALLRGLLGDGEYARWESLVLRGCWTRCPTWPTAPGAAPRAWRPATTPSARGASS 360
Query: 361 XXXXXXXXXXXXXXXXXXRTRCSTSCWN 388
RTRCSTSCWN
Sbjct: 361 PSAPSAGSGATSGTPASPRTRCSTSCWN 388
>Os04g0593700 RWD domain containing protein
Length = 461
Score = 228 bits (582), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 180/316 (56%), Gaps = 12/316 (3%)
Query: 14 DEADAGNWDAGVETAARLEAMVHAED-ELSEEQIQANNQTQEDELLALQAIYGDDLVIFD 72
DE+ G + L A E+ ELS+EQ+++N+Q QEDE+LAL+AIYGD++ I
Sbjct: 8 DESHGGAAATALLHEMLLRARRDGEEPELSDEQLRSNDQLQEDEMLALEAIYGDNISILS 67
Query: 73 NKDGLRFFQISLHYQLAGDIRVYLNVCPNGRTETGAENXXXXXXXRLLYACSLQHLPPVV 132
KDGLR FQ+ +H ++ I V + R + +N R S+QHL P+
Sbjct: 68 AKDGLRCFQVHVHCEIPDGISVSAEL---SRDDNRDQNS------RFFDTFSVQHLAPIS 118
Query: 133 LACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQEVVYKWVDWLSTS 192
CL+P YPSH APYF ++++WLD +VSS C +LD IW++Q G EVVY WV WL +S
Sbjct: 119 FTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQ-LGLEVVYGWVQWLQSS 177
Query: 193 SWFCIASDDQIVFG-PDADSAGGDDRAIGRSCSLDSMIPLIQRYSKERSHEIFARRIHEC 251
+ + +D IV PD+ D R + S++S + + Y++E+ HE F +H+C
Sbjct: 178 ALSHLGFNDGIVIQQPDSMMGPVDVRVVAEIVSVESAVQWLISYNEEQCHESFLIGLHDC 237
Query: 252 GVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSCXXXXXXXXXXX 311
+C +E G +FI+LPC H FC +CMET R+HV EG+V +L CP+ C
Sbjct: 238 MICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKR 297
Query: 312 XXXXXEYARWESLVLR 327
++ RWE L L+
Sbjct: 298 MLGDKDFERWERLTLQ 313
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 153/269 (56%), Gaps = 10/269 (3%)
Query: 66 DDLV-IFDNKDGLRFFQISLHYQLAGDIRVYLNVC-------PNGRTETGAENXXXXXXX 117
DDL I + K GL +F+I +HY L V + +GR G E
Sbjct: 9 DDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIEGHGDEPED 68
Query: 118 RLLYACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPA 177
Y C+ ++LPP+VL CLLP YPS PYF V KW+D P VS C +LD IWAE P
Sbjct: 69 -FSYTCNFEYLPPLVLTCLLPLSYPSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELP- 126
Query: 178 GQEVVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGGDDRAIGRSCSLDSMIPLIQRYSK 237
GQEVVY+WV+ L SS + D +I GPD GD+RAI RS SL+S+IP + YS
Sbjct: 127 GQEVVYRWVESLRNSSRSYLWFDGKITLGPDTPMQKGDNRAISRSLSLESVIPSMLSYSS 186
Query: 238 ERSHEIFARRIHECGVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPD 297
++ ++ F +H C +CLS++ G NFI+LPC H FCVKC+ T CR+HVKEGSV +L CPD
Sbjct: 187 KKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCPD 246
Query: 298 TSCXXXXXXXXXXXXXXXXEYARWESLVL 326
T C E+ RW+ L L
Sbjct: 247 TKCNASIPPYVLKRLLTEDEFERWDRLTL 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,349,266
Number of extensions: 507587
Number of successful extensions: 1436
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)