BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0668500 Os02g0668500|AK071867
         (211 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0668500  Cellular retinaldehyde-binding/triple function...   362   e-100
Os04g0561200  Cellular retinaldehyde-binding/triple function...   258   2e-69
Os01g0948300  Cellular retinaldehyde-binding/triple function...   137   5e-33

>Os02g0668500 Cellular retinaldehyde-binding/triple function, C-terminal domain
           containing protein
          Length = 211

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/211 (86%), Positives = 183/211 (86%)

Query: 1   MVDLIHETDDAMAEAELLLERSRAITLNGRDKRGRALVRIVGKYFPXXXXXXXXXXXXXX 60
           MVDLIHETDDAMAEAELLLERSRAITLNGRDKRGRALVRIVGKYFP              
Sbjct: 1   MVDLIHETDDAMAEAELLLERSRAITLNGRDKRGRALVRIVGKYFPARALGGRAEAALRG 60

Query: 61  YVRRRVLPEIGEREFVVVYVHSLVDRGDNFPGVXXXXXXXXXXXXXXKERLRAVYFVHPG 120
           YVRRRVLPEIGEREFVVVYVHSLVDRGDNFPGV              KERLRAVYFVHPG
Sbjct: 61  YVRRRVLPEIGEREFVVVYVHSLVDRGDNFPGVAAIRAAYEALPAAAKERLRAVYFVHPG 120

Query: 121 FQARLFFATLGRFLFSSGLYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLM 180
           FQARLFFATLGRFLFSSGLYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLM
Sbjct: 121 FQARLFFATLGRFLFSSGLYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLM 180

Query: 181 DYGIEATDRRCMFDAASMDTSASLHSLRCIS 211
           DYGIEATDRRCMFDAASMDTSASLHSLRCIS
Sbjct: 181 DYGIEATDRRCMFDAASMDTSASLHSLRCIS 211



>Os04g0561200 Cellular retinaldehyde-binding/triple function, C-terminal domain
           containing protein
          Length = 226

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 152/207 (73%), Gaps = 2/207 (0%)

Query: 7   ETDDAMAEAELLLERSRAITLNGRDKRGRALVRIVGKYFPXXX--XXXXXXXXXXXYVRR 64
           E  DAM + E+LLE+ R IT+ GRDK GR +VRIVGK FP                YVRR
Sbjct: 20  EDMDAMTKQEILLEKKRVITVQGRDKAGRPIVRIVGKNFPARELGGGGHAEAALKGYVRR 79

Query: 65  RVLPEIGEREFVVVYVHSLVDRGDNFPGVXXXXXXXXXXXXXXKERLRAVYFVHPGFQAR 124
           RV P IG+ EFVVVY+HS VDR +NFPGV              +ERL AVYF+HPG Q+R
Sbjct: 80  RVTPAIGDAEFVVVYMHSGVDRRENFPGVGAVRTAYESMPAAVRERLHAVYFLHPGLQSR 139

Query: 125 LFFATLGRFLFSSGLYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLMDYGI 184
           LFF+TLGRFLFSSGLY KLRY+SRLEYLW HV KGE++VPE  RRHD+ELE+RPLMDYGI
Sbjct: 140 LFFSTLGRFLFSSGLYGKLRYVSRLEYLWAHVRKGELDVPEAVRRHDDELEQRPLMDYGI 199

Query: 185 EATDRRCMFDAASMDTSASLHSLRCIS 211
           EA++R  +FDAASMDT+ASLHSLRC S
Sbjct: 200 EASERCGVFDAASMDTTASLHSLRCAS 226



>Os01g0948300 Cellular retinaldehyde-binding/triple function, C-terminal domain
           containing protein
          Length = 253

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 19  LERSRAITLNGRDKRGRALVRIVGKYFPXXXXXXXXXXXXXXYVRRRVLPEIGEREFVVV 78
           LE  + + + G D+ GR +VR+VG++FP              YV  ++  E+ E  F ++
Sbjct: 55  LEELQVVRVQGTDRAGRRIVRVVGRFFPAPVIGGDRLKK---YVLHKLRTELPEGPFCLL 111

Query: 79  YVHSLVDRGDNFPGVXXXXXXXXXXXXXXKERLRAVYFVHPGFQARLFFATLGRFLFSSG 138
           Y+HS V   DN PG+              KERL+ +YF+HPG ++RL  ATLGR   S G
Sbjct: 112 YMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGG 171

Query: 139 LYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEELERRPLMDYGIEA 186
           LY K++Y+SRLEYLW  + KGE+E+P+    HD+ LE RPL DYGIE 
Sbjct: 172 LYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEP 219



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,020,539
Number of extensions: 202861
Number of successful extensions: 505
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 3
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)