BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0639300 Os02g0639300|AK101596
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0639300  CBS domain containing protein                       333   9e-92
Os10g0499400  CBS domain containing protein                        89   6e-18
Os04g0679600  CBS domain containing protein                        73   2e-13

>Os02g0639300 CBS domain containing protein
          Length = 304

 Score =  333 bits (854), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 189/304 (62%), Positives = 189/304 (62%)

Query: 1   TVCDLVQLCSLLDAIDALLSNDAQTLLVPLXXXXXXXXXXXXXXXXGCSPANPAAATDYC 60
           TVCDLVQLCSLLDAIDALLSNDAQTLLVPL                GCSPANPAAATDYC
Sbjct: 1   TVCDLVQLCSLLDAIDALLSNDAQTLLVPLHAHAARSRKHHHVHVSGCSPANPAAATDYC 60

Query: 61  VLTREDIVRHLFSYSISLFAPVAARTVASLGLVRRXXXXXXXXXXXXXXXXXXRRSIXXX 120
           VLTREDIVRHLFSYSISLFAPVAARTVASLGLVRR                  RRSI   
Sbjct: 61  VLTREDIVRHLFSYSISLFAPVAARTVASLGLVRRDVHAVHADDDALDAIPLLRRSIADG 120

Query: 121 XXXXXXXXXXXXXGEICPGVLGSCDIEXXXXXXXXXXXGDVMTYIDCSLSPPEFLLRSIR 180
                        GEICPGVLGSCDIE           GDVMTYIDCSLSPPEFLLRSIR
Sbjct: 121 TAVAVVADDDALVGEICPGVLGSCDIESASAAFAALSAGDVMTYIDCSLSPPEFLLRSIR 180

Query: 181 AQLKGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           AQLKGRG                                                     
Sbjct: 181 AQLKGRGMDAMADLMDAADDAASSLPLSPSSSSSASSDEDSPFGRARRARRSSSGSFRWR 240

Query: 241 XTKDVAACHAGSSLVAVMAQALAHRVGYVWVVDEVSGALTGVVSFGDVLAVLREHLRDGD 300
            TKDVAACHAGSSLVAVMAQALAHRVGYVWVVDEVSGALTGVVSFGDVLAVLREHLRDGD
Sbjct: 241 STKDVAACHAGSSLVAVMAQALAHRVGYVWVVDEVSGALTGVVSFGDVLAVLREHLRDGD 300

Query: 301 TQMN 304
           TQMN
Sbjct: 301 TQMN 304



>Os10g0499400 CBS domain containing protein
          Length = 282

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 6   VQLCSLLDAIDALLSNDAQTLLVPLXXXXXXXXXXXXXXXXGCSPANPAAATDYCVLTRE 65
           V LCS+L+A+DA+LS  AQ L VPL                           DYC LT+E
Sbjct: 4   VVLCSVLEALDAVLSG-AQVLAVPLRSGGRRKQLGGG--------GGGGGGGDYCWLTQE 54

Query: 66  DIVRHLFSYSISLFAPVAARTVASLGLVRRXXXXXXXXXXXXXXXX-XXRRSIXXXXXXX 124
           D+VR+ F  SISLF+ VA R+V+SLGLVR                    RR+I       
Sbjct: 55  DLVRY-FLNSISLFSHVAGRSVSSLGLVRADDLLTVRPHEAALSAVPLLRRAIATETAVA 113

Query: 125 XXXXXXXXXGEICPGVLGSCDIEXXXXXXXXXXXGDVMTYIDCSLSPPEFLLRSIRAQLK 184
                    GEI P +L SCD E            D+M Y+D   +PPE +LR+++A LK
Sbjct: 114 VVDDGGHLVGEISPALLASCD-ETAAAAIATLSVADLMAYVDYFGAPPEHILRAVKAGLK 172

Query: 185 GRG 187
            +G
Sbjct: 173 SKG 175



>Os04g0679600 CBS domain containing protein
          Length = 398

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 41/56 (73%)

Query: 242 TKDVAACHAGSSLVAVMAQALAHRVGYVWVVDEVSGALTGVVSFGDVLAVLREHLR 297
            + + ACH GSSLVAVMAQA+AHRV  VWVVD   G L GVV F DVL VLREHL 
Sbjct: 323 NRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGELVGVVRFLDVLWVLREHLN 378



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,072,220
Number of extensions: 154446
Number of successful extensions: 391
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 4
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)