Os10g0499400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os10g0499400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.37 | 0.419 | 12.5 | 0.73 | 1.92 | 1.74 | -0.324 | -0.279 | 0.137 | 11.9 | 26.67 | 83 | -- | -- |
| 79.49 | 0.415 | 12.5 | 0.706 | 1.93 | 1.77 | -0.246 | -- | 0.136 | 11.9 | 26.63 | 83 | -- | -- |
| 79.72 | 0.416 | 12.5 | 0.678 | 1.93 | 1.75 | -- | -0.0411 | 0.126 | 11.9 | 26.69 | 80 | -- | -- |
| 79.73 | 0.416 | 12.5 | 0.672 | 1.93 | 1.76 | -- | -- | 0.127 | 11.9 | 26.68 | 80 | -- | -- |
| 183.95 | 0.632 | 12.5 | 1.11 | -- | 2.48 | -- | -1.1 | 0.297 | -- | 29.5 | 843 | -- | -- |
| 123.12 | 0.52 | 12.6 | 0.245 | 1.61 | -- | -0.24 | -- | -0.261 | 11.2 | -- | -- | -- | -- |
| 123.36 | 0.52 | 12.6 | 0.235 | 1.61 | -- | -- | -- | -0.262 | 11.2 | -- | -- | -- | -- |
| 185.54 | 0.634 | 12.5 | 0.898 | -- | 2.49 | -- | -- | 0.266 | -- | 29.2 | 844 | -- | -- |
| 90.96 | 0.444 | 12.5 | -- | 1.94 | 1.57 | -- | -- | 0.0562 | 11.8 | 26.6 | 68 | -- | -- |
| 285.57 | 0.79 | 12.6 | 0.196 | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
| 124.82 | 0.523 | 12.6 | -- | 1.61 | -- | -- | -- | -0.288 | 11.2 | -- | -- | -- | -- |
| 205.41 | 0.668 | 12.5 | -- | -- | 2.06 | -- | -- | 0.108 | -- | 28.9 | 840 | -- | -- |
| 286.59 | 0.79 | 12.6 | -- | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 2 | 66.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 7 | 69.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 30 | 74.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 47 | 77.12 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 55 | 77.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 58 | 77.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 81 | 79.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 21 |
| 90 | 79.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 91 | 79.82 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 179 | 82.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 198 | 82.34 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 213 | 82.47 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 217 | 82.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 220 | 82.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 266 | 83.05 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 9 |
| 294 | 83.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 313 | 83.53 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 19 |
| 320 | 83.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 352 | 83.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 424 | 84.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 459 | 84.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 496 | 85.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 528 | 85.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 566 | 86.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 600 | 86.44 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 21 |
| 640 | 86.84 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 715 | 87.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 783 | 87.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 796 | 88.07 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 9 |
| 818 | 88.19 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 886 | 88.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 946 | 88.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 960 | 88.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 990 | 88.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |