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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0679600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CBS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0389) R2 : 0.0017
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0723 (0.082) R2dN8 : 0.0022 R2N8 : 0.0017
σ : 0.733
deviance : 246.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.17 0.713 2.83 0.283 0.236 0.218 -0.573 1.97 -0.0399 3.79 32.49 1533 -- --
236.83 0.717 2.86 0.0301 0.288 0.431 -0.626 -- -0.146 3.64 32.32 1757 -- --
230.94 0.708 2.83 0.272 0.241 0.242 -- 2.11 -0.0506 4.05 32.33 1605 -- --
237.95 0.718 2.88 0.0401 0.326 0.418 -- -- -0.166 3.95 32.32 1757 -- --
234.11 0.713 2.83 0.316 -- 0.214 -- 2.12 -0.0272 -- 32.37 1567 -- --
242.09 0.729 2.85 0.0865 0.256 -- -0.552 -- -0.0705 3.77 -- -- -- --
242.83 0.73 2.85 0.0949 0.263 -- -- -- -0.0675 4.54 -- -- -- --
241.63 0.724 2.87 0.0621 -- 0.385 -- -- -0.15 -- 34.47 1419 -- --
237.88 0.718 2.87 -- 0.306 0.432 -- -- -0.153 4.12 32.33 1757 -- --
246.54 0.734 2.85 0.105 -- -- -- -- -0.0606 -- -- -- -- --
243.07 0.729 2.85 -- 0.265 -- -- -- -0.0781 4.53 -- -- -- --
241.61 0.724 2.86 -- -- 0.362 -- -- -0.132 -- 33.06 1418 -- --
246.83 0.733 2.85 -- -- -- -- -- -0.0723 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.57 atmosphere 995.0 10 > th dose independent rect. 5 23
2 224.63 temperature 20.0 10 > th dose independent rect. 4 1
3 224.84 humidity 80.0 10 > th dose dependent rect. 4 1
6 224.99 atmosphere 1000.0 10 > th dose independent rect. 4 1
8 225.01 temperature 15.0 10 > th dose dependent rect. 4 1
11 225.06 humidity 80.0 10 > th dose independent rect. 4 1
12 225.07 precipitation 0.1 10 < th dose independent rect. 4 1
13 225.07 precipitation 0.1 10 < th dose dependent rect. 4 1
14 225.09 wind 3.0 10 < th dose independent rect. 4 1
15 225.12 atmosphere 1015.0 10 < th dose dependent rect. 4 1
16 225.15 wind 9.0 10 < th dose independent rect. 4 1
17 225.15 temperature 10.0 10 > th dose independent rect. 4 1
19 225.15 temperature 30.0 10 < th dose independent rect. 4 1
20 225.15 humidity 50.0 10 > th dose independent rect. 4 1
24 225.15 atmosphere 1010.0 10 < th dose independent rect. 4 1
26 225.15 radiation 1.0 10 < th dose independent rect. 4 1
31 225.15 temperature 10.0 10 > th dose independent rect. 5 23
32 225.17 radiation 30.0 10 < th dose dependent rect. 4 1
42 225.33 atmosphere 995.0 10 > th dose dependent rect. 4 1
45 225.66 temperature 30.0 10 < th dose dependent rect. 4 1
46 225.70 wind 9.0 10 < th dose dependent rect. 4 1
47 225.81 wind 9.0 10 < th dose independent rect. 5 23
52 226.50 wind 3.0 90 < th dose independent rect. 16 1
53 226.59 radiation 1.0 10 < th dose dependent rect. 4 14
55 227.60 radiation 1.0 10 < th dose dependent rect. 4 4
64 227.92 radiation 1.0 10 < th dose independent rect. 4 4
71 227.97 atmosphere 1000.0 10 < th dose independent rect. 7 1
78 227.97 atmosphere 1000.0 10 < th dose dependent rect. 7 1
95 228.10 radiation 1.0 10 < th dose independent rect. 4 14
105 228.66 temperature 30.0 10 < th dose dependent rect. 5 23
106 228.82 wind 5.0 90 < th dose dependent rect. 16 1
107 228.97 temperature 25.0 720 > th dose dependent rect. 20 12
108 229.30 temperature 10.0 30 > th dose dependent rect. 14 15
122 229.44 wind 1.0 30 < th dose dependent rect. 17 1
155 229.87 humidity 50.0 10 > th dose dependent rect. 5 23
157 229.91 humidity 80.0 10 > th dose dependent rect. 5 23
164 229.99 temperature 30.0 720 < th dose independent rect. 18 1
171 230.04 humidity 70.0 30 < th dose dependent rect. 17 1
205 230.16 temperature 15.0 10 > th dose independent rect. 19 9
208 230.23 precipitation 0.1 10 < th dose independent rect. 5 23
209 230.23 precipitation 0.1 10 < th dose dependent rect. 5 23
211 230.25 temperature 10.0 720 > th dose dependent rect. 14 18
216 230.32 temperature 10.0 1440 > th dose dependent rect. 15 3
219 230.37 temperature 25.0 720 > th dose dependent rect. 20 4
223 230.40 temperature 25.0 720 > th dose dependent rect. 21 1
238 230.43 temperature 15.0 30 > th dose dependent rect. 6 23
244 230.48 humidity 70.0 90 < th dose independent rect. 17 1
248 230.50 temperature 20.0 10 > th dose independent rect. 4 14
249 230.50 temperature 30.0 720 < th dose dependent rect. 9 18
255 230.55 temperature 20.0 90 > th dose dependent rect. 23 9
256 230.56 radiation 1.0 720 > th dose independent rect. 17 14
259 230.59 temperature 10.0 10 > th dose dependent rect. 4 14
260 230.60 humidity 60.0 720 > th dose independent rect. 18 1
264 230.62 temperature 30.0 720 < th dose dependent sin 17 NA
266 230.64 humidity 90.0 90 > th dose independent rect. 14 4
272 230.68 temperature 15.0 270 > th dose independent rect. 17 7
276 230.70 temperature 10.0 1440 > th dose dependent rect. 9 9
277 230.71 humidity 90.0 90 > th dose independent rect. 15 2
278 230.71 radiation 1.0 720 < th dose dependent rect. 5 15
285 230.75 temperature 10.0 720 > th dose dependent rect. 13 12
300 230.80 temperature 30.0 720 < th dose dependent rect. 18 3
303 230.82 temperature 25.0 720 > th dose independent rect. 17 15
307 230.83 humidity 90.0 90 > th dose dependent rect. 14 3
339 230.92 temperature 30.0 720 < th dose dependent rect. 5 18
358 230.96 radiation 1.0 10 > th dose independent rect. 5 9
386 231.00 temperature 10.0 1440 > th dose dependent rect. 10 1
446 231.11 humidity 50.0 720 > th dose dependent rect. 18 1
491 231.17 temperature 25.0 720 > th dose independent rect. 19 13
503 231.19 radiation 30.0 1440 > th dose independent rect. 14 21
507 231.21 temperature 10.0 720 > th dose dependent sin 15 NA
513 231.23 temperature 10.0 1440 > th dose dependent sin 22 NA
519 231.25 temperature 15.0 270 > th dose independent rect. 18 17
544 231.31 radiation 1.0 720 < th dose dependent sin 14 NA
545 231.31 temperature 25.0 1440 > th dose dependent rect. 15 1
587 231.36 temperature 30.0 1440 < th dose dependent rect. 16 2
595 231.38 temperature 25.0 720 > th dose independent rect. 19 15
599 231.39 radiation 30.0 1440 < th dose independent rect. 14 21
631 231.44 temperature 25.0 720 > th dose dependent rect. 17 15
643 231.46 radiation 1.0 720 < th dose dependent sin 23 NA
645 231.46 radiation 1.0 720 < th dose dependent rect. 18 1
665 231.48 temperature 15.0 90 > th dose independent rect. 18 9
673 231.49 temperature 15.0 90 > th dose dependent rect. 3 15
692 231.51 temperature 20.0 30 > th dose dependent rect. 14 18
693 231.52 radiation 30.0 1440 > th dose independent sin 12 NA
735 231.58 temperature 30.0 1440 < th dose dependent rect. 10 1
744 231.60 radiation 40.0 1440 < th dose independent rect. 9 18
745 231.60 radiation 40.0 1440 < th dose independent rect. 9 22
751 231.61 radiation 40.0 1440 < th dose independent rect. 9 15
763 231.61 radiation 30.0 1440 > th dose dependent rect. 12 23
764 231.62 radiation 40.0 1440 < th dose independent rect. 9 12
776 231.63 radiation 40.0 1440 > th dose independent sin 17 NA
778 231.63 radiation 40.0 1440 < th dose independent rect. 9 7
780 231.63 radiation 40.0 1440 < th dose independent rect. 9 10
815 231.67 temperature 30.0 720 < th dose dependent rect. 15 7
823 231.68 radiation 20.0 1440 > th dose dependent rect. 9 8
848 231.69 radiation 1.0 720 > th dose dependent rect. 17 14
851 231.70 radiation 40.0 1440 < th dose independent sin 19 NA
853 231.70 radiation 30.0 1440 > th dose independent rect. 9 23
873 231.72 radiation 20.0 1440 > th dose dependent sin 18 NA
880 231.73 temperature 25.0 720 > th dose independent sin 12 NA
890 231.73 humidity 70.0 1440 < th dose dependent rect. 15 2
896 231.74 radiation 30.0 1440 > th dose independent no NA NA
898 231.74 radiation 40.0 1440 > th dose independent rect. 11 4
904 231.74 radiation 30.0 1440 > th dose independent rect. 7 10