BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0679600 Os04g0679600|AK109942
(398 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27460.1 | chr4:13732939-13734263 FORWARD LENGTH=392 109 3e-24
AT5G53750.1 | chr5:21817416-21818723 FORWARD LENGTH=409 75 7e-14
AT1G65320.1 | chr1:24260168-24262644 REVERSE LENGTH=426 50 2e-06
>AT4G27460.1 | chr4:13732939-13734263 FORWARD LENGTH=392
Length = 391
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 159/413 (38%), Gaps = 60/413 (14%)
Query: 1 MVLQSHDVSDLCIGKPPVRWLPPSSTVADXXXXXXXXXXRGPDAAVAVWD-------GTK 53
+ L S++VSDLC+GKPP+R L SS+ D ++VW+ T+
Sbjct: 3 LSLLSYNVSDLCLGKPPLRCLSSSSSSV---SDAIAALKSSEDTFLSVWNCNHDDDNNTE 59
Query: 54 GEVDGRVCMADVHLFLCGGDGEXXXXXXXXXXXXXXXXDLLAAGAPPVRRIEPHASVVEA 113
E G++ MADV L LL V ++P S++EA
Sbjct: 60 CECLGKISMADVICHLSKDHDHSLCALNSSVSV------LLPKTRSIVLHVQPSCSLIEA 113
Query: 114 VDAFLDGAHCLVVPI-------------XXXXXXXXXXGEMCMCWLTVEDVVRFFVGCIG 160
+D + GA L+VPI CW+T ED+++F +G I
Sbjct: 114 IDLIIKGAQNLIVPIHTKPYTKKKQHNDNVSVTTTTHSNGQRFCWITQEDIIQFLLGFIA 173
Query: 161 LFAPTGLALRFLSSGISPRGHAPVAAG--DRXXXXXXXXXXXXXTHSSVAVITGAGIAP- 217
F+P A+ G+ H VA +SVAV+ G G P
Sbjct: 174 AFSPLP-AMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVDGEGDDPF 232
Query: 218 -RLAGEVSPSALCSCXXXXXXXXXXXXXXXXXXFLHRSD--------LRCRRNLPGMVDL 268
L GE+SP L C ++ ++ +R R G++ L
Sbjct: 233 TSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGL 292
Query: 269 LYAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDEAEDGYKHY--APAPCARRDNNRQI 326
+ D ++EA Y + + AR +
Sbjct: 293 MSLFDSLSSYSTSSGYSS---------------EEEAPVRTTSYGRSMSSSARMARKSEA 337
Query: 327 IACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGELVGVVRFLDVLWVLREHLNQ 379
I C+P SSL+AVM QAVAHRV WVV+ DG VG+V F+D+L V R+ L
Sbjct: 338 IVCNPKSSLMAVMIQAVAHRVNYAWVVE-KDGCFVGMVTFVDILKVFRKFLEN 389
>AT5G53750.1 | chr5:21817416-21818723 FORWARD LENGTH=409
Length = 408
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 102/269 (37%), Gaps = 46/269 (17%)
Query: 1 MVLQSHDVSDLCIGKPPVRWLP-PSSTVADXXXXXXXXXXRGPDAAVAVW---------D 50
+ L SH++SDLCIGKPP+R L ++TVAD + + VW D
Sbjct: 3 LTLLSHELSDLCIGKPPLRCLSVATATVADAIAALKS----SDEPFLTVWSCNHDEKTDD 58
Query: 51 GTKGEVDGRVCMADVHLFLCGGDGEXXXXXXXXXXXXXXXXDLLAAGAPPVRRIEPHASV 110
K E G++CMADV +L D LL V ++ S+
Sbjct: 59 NDKCECLGKICMADVICYLSKFDNNVLSLSSAFDASVSV---LLPKSRALVVHVQSSCSL 115
Query: 111 VEAVDAFLDGAHCLVVPIXXXXXXXXXXGEMCM----------------------CWLTV 148
+EA+D + GA L+VPI + + CW+T
Sbjct: 116 IEAIDLIIKGAQNLIVPIHTKSITKRRQQQKLLKRNVVVSLTNATSTTHKNSREFCWITQ 175
Query: 149 EDVVRFFVGCIGLFAPTGLALRFLSSGISPRGHAPVAAGDRXXXXXXXXXXXXXTHSSVA 208
ED++RF + I +F+P +L G+ H +A +V+
Sbjct: 176 EDIIRFLLDSISVFSPLP-SLSISDLGVINSTHTILAVDYYSSAASAVSAISRAILDNVS 234
Query: 209 V-ITGAGIAPR-----LAGEVSPSALCSC 231
V + G G L GE+SP L C
Sbjct: 235 VAVVGKGCDQEDPCMVLIGEISPMTLACC 263
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 318 ARRDNNRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGELVGVVRFLDVLWVLREHL 377
AR I C+ SSL+AVM QA+AHRV+ VWV+D +DG L+G+V F+D+L + RE L
Sbjct: 346 ARMARKSVAIVCNRKSSLMAVMIQAIAHRVSYVWVID-EDGCLIGMVTFVDILKLFREFL 404
Query: 378 N 378
+
Sbjct: 405 D 405
>AT1G65320.1 | chr1:24260168-24262644 REVERSE LENGTH=426
Length = 425
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 327 IACHPGSSLVAVMAQAVAHRVTQVWVVDFD-DGELVGVVRFLDVLWVLREHLNQPPLIYP 385
+ C SSL AVMAQ ++HR T VWV + D D LVGVV + ++L + + QP P
Sbjct: 355 LTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTK---QPSAFVP 411
Query: 386 SNFS 389
SN S
Sbjct: 412 SNRS 415
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,999,506
Number of extensions: 217478
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 5
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)