BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0679600 Os04g0679600|AK109942
(398 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0679600 CBS domain containing protein 579 e-165
Os02g0639300 CBS domain containing protein 73 4e-13
>Os04g0679600 CBS domain containing protein
Length = 398
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 303/398 (76%), Positives = 303/398 (76%)
Query: 1 MVLQSHDVSDLCIGKPPVRWLPPSSTVADXXXXXXXXXXRGPDAAVAVWDGTKGEVDGRV 60
MVLQSHDVSDLCIGKPPVRWLPPSSTVAD RGPDAAVAVWDGTKGEVDGRV
Sbjct: 1 MVLQSHDVSDLCIGKPPVRWLPPSSTVADAIAEIEAGGGRGPDAAVAVWDGTKGEVDGRV 60
Query: 61 CMADVHLFLCGGDGEXXXXXXXXXXXXXXXXDLLAAGAPPVRRIEPHASVVEAVDAFLDG 120
CMADVHLFLCGGDGE DLLAAGAPPVRRIEPHASVVEAVDAFLDG
Sbjct: 61 CMADVHLFLCGGDGEAASLASPAAALQATLSDLLAAGAPPVRRIEPHASVVEAVDAFLDG 120
Query: 121 AHCLVVPIXXXXXXXXXXGEMCMCWLTVEDVVRFFVGCIGLFAPTGLALRFLSSGISPRG 180
AHCLVVPI GEMCMCWLTVEDVVRFFVGCIGLFAPTGLALRFLSSGISPRG
Sbjct: 121 AHCLVVPIRERWRRAAAAGEMCMCWLTVEDVVRFFVGCIGLFAPTGLALRFLSSGISPRG 180
Query: 181 HAPVAAGDRXXXXXXXXXXXXXTHSSVAVITGAGIAPRLAGEVSPSALCSCXXXXXXXXX 240
HAPVAAGDR THSSVAVITGAGIAPRLAGEVSPSALCSC
Sbjct: 181 HAPVAAGDRALSAVPLLSAALATHSSVAVITGAGIAPRLAGEVSPSALCSCDVSVAAAIA 240
Query: 241 XXXXXXXXXFLHRSDLRCRRNLPGMVDLLYAGDXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
FLHRSDLRCRRNLPGMVDLLYAGD
Sbjct: 241 ALSAGDLTAFLHRSDLRCRRNLPGMVDLLYAGDPSSWPPSPSSSSSSSSSSSSLSSFSSS 300
Query: 301 XDDEAEDGYKHYAPAPCARRDNNRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGEL 360
DDEAEDGYKHYAPAPCARRDNNRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGEL
Sbjct: 301 SDDEAEDGYKHYAPAPCARRDNNRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGEL 360
Query: 361 VGVVRFLDVLWVLREHLNQPPLIYPSNFSSINPSTKLR 398
VGVVRFLDVLWVLREHLNQPPLIYPSNFSSINPSTKLR
Sbjct: 361 VGVVRFLDVLWVLREHLNQPPLIYPSNFSSINPSTKLR 398
>Os02g0639300 CBS domain containing protein
Length = 304
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 41/56 (73%)
Query: 323 NRQIIACHPGSSLVAVMAQAVAHRVTQVWVVDFDDGELVGVVRFLDVLWVLREHLN 378
+ + ACH GSSLVAVMAQA+AHRV VWVVD G L GVV F DVL VLREHL
Sbjct: 242 TKDVAACHAGSSLVAVMAQALAHRVGYVWVVDEVSGALTGVVSFGDVLAVLREHLR 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,158,138
Number of extensions: 411303
Number of successful extensions: 647
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)