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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0639300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CBS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.043) R2 : 0.128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.65 (0.203) R2dE : 0.133 R2E : 0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0982 (0.0918) R2dN8 : 0.0012 R2N8 : -0.00507
σ : 0.805
deviance : 298.92
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2
memory length : 1422
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 4.53

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
285.31 0.794 3.22 0.891 0.207 -5.12 -0.412 -9.35 0.13 12.5 0.9997 1441 10 5.99
294.8 0.8 3.15 0.593 0.0235 -1.92 0.533 -- 0.0842 1.77 1.5 1424 10.7 5.72
285.91 0.788 3.22 0.872 0.243 -5.13 -- -9.41 0.122 12.4 0.9992 1441 10 6
291.95 0.796 3.13 0.618 0.0281 -1.86 -- -- 0.108 1.61 1.672 1423 10.7 5.36
287.83 0.79 3.22 0.849 -- -5.11 -- -9.33 0.13 -- 0.9361 1436 10 5.97
339.1 0.863 3.12 0.268 0.152 -- -0.361 -- -0.0121 12.5 -- -- -- --
339.65 0.863 3.12 0.254 0.153 -- -- -- -0.0137 12.6 -- -- -- --
291.67 0.795 3.12 0.616 -- -1.92 -- -- 0.102 -- 1.676 1425 10.7 5.33
299.62 0.806 3.1 -- 0.0319 -1.69 -- -- 0.113 1.5 2.008 1419 10.5 5.31
341.13 0.863 3.13 0.249 -- -- -- -- -0.0164 -- -- -- -- --
341.36 0.864 3.13 -- 0.149 -- -- -- -0.0421 12.5 -- -- -- --
298.92 0.805 3.12 -- -- -1.65 -- -- 0.0982 -- 2 1422 11.2 4.53
342.76 0.864 3.13 -- -- -- -- -- -0.044 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.31 radiation 1 1440 > th dose independent rect. 10 6
2 285.32 radiation 1 1440 < th dose independent rect. 8 8
4 285.36 radiation 1 1440 < th dose independent rect. 10 6
13 289.76 radiation 1 1440 < th dose independent rect. 11 1
14 289.76 radiation 1 1440 < th dose dependent rect. 11 1
15 291.60 radiation 1 1440 < th dose dependent rect. 15 1
17 291.71 radiation 1 1440 > th dose independent rect. 10 3
19 293.43 radiation 10 1440 > th dose independent rect. 11 1
21 294.22 radiation 1 1440 < th dose dependent rect. 10 6
22 294.27 radiation 1 1440 < th dose dependent rect. 8 8
42 295.53 radiation 1 1440 < th dose independent rect. 10 3
43 295.53 radiation 1 1440 < th dose dependent rect. 10 3
55 295.99 radiation 1 1440 < th dose dependent rect. 13 1
136 304.79 radiation 1 1440 < th dose independent rect. 11 14
140 304.80 radiation 1 1440 < th dose independent rect. 11 12
142 304.81 radiation 1 1440 < th dose independent rect. 11 16
215 305.48 temperature 25 1440 < th dose independent rect. 11 1
219 305.58 temperature 25 1440 > th dose independent rect. 11 1
253 306.07 radiation 1 1440 < th dose dependent rect. 11 12
254 306.07 radiation 1 1440 < th dose dependent rect. 11 14
256 306.09 radiation 1 1440 < th dose dependent rect. 11 16
313 307.19 radiation 1 1440 > th dose independent sin 20 NA
314 307.19 radiation 1 1440 < th dose independent sin 20 NA
324 307.59 humidity 60 14400 < th dose independent rect. 6 1
326 307.59 humidity 60 14400 < th dose independent rect. 20 1
328 307.59 radiation 20 14400 > th dose independent rect. 17 1
379 307.59 humidity 60 14400 < th dose dependent rect. 6 1
381 307.59 humidity 60 14400 < th dose dependent rect. 20 1
383 307.59 radiation 20 14400 > th dose dependent rect. 17 1
448 307.93 radiation 1 1440 < th dose dependent sin 21 NA
466 308.06 temperature 20 10 > th dose dependent rect. 14 22
476 308.41 humidity 60 14400 > th dose independent rect. 7 1
524 309.85 humidity 60 14400 > th dose independent rect. 20 12
527 309.87 temperature 25 1440 > th dose independent rect. 11 8
528 309.91 temperature 25 1440 < th dose independent rect. 11 8
535 310.18 temperature 10 90 > th dose dependent rect. 13 23
541 310.31 temperature 25 1440 < th dose dependent rect. 13 1
552 310.67 humidity 60 14400 > th dose independent rect. 23 9
667 311.99 temperature 25 1440 < th dose dependent rect. 11 4
693 312.32 atmosphere 1015 4320 < th dose independent rect. 10 1
700 312.41 atmosphere 1015 4320 > th dose independent rect. 10 1
770 312.95 humidity 90 720 > th dose dependent rect. 20 4
796 313.17 temperature 25 1440 < th dose independent sin 21 NA
804 313.20 humidity 80 1440 > th dose independent rect. 11 2
825 313.39 temperature 25 1440 > th dose independent sin 21 NA
835 313.43 radiation 1 1440 < th dose dependent rect. 22 19
839 313.46 radiation 1 1440 < th dose dependent rect. 2 15
863 313.60 humidity 80 1440 < th dose independent rect. 7 6
871 313.66 temperature 25 270 < th dose dependent rect. 13 2
878 313.72 humidity 80 1440 < th dose independent rect. 3 10
895 313.75 humidity 80 1440 < th dose independent rect. 23 14
926 313.94 humidity 80 1440 < th dose independent rect. 12 1
930 313.99 humidity 80 14400 < th dose independent rect. 21 2
963 314.23 humidity 80 14400 > th dose independent rect. 21 3