BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0637000 Os02g0637000|J043027D06
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0637000 Barwin-related endoglucanase domain containing... 365 e-101
Os04g0364800 Barwin-related endoglucanase domain containing... 257 4e-69
Os10g0490666 142 1e-34
Os10g0490100 Virulence factor, pectin lyase fold family pro... 135 2e-32
Os10g0489301 106 1e-23
Os10g0489400 101 4e-22
Os10g0490400 Zinc finger, SWIM-type domain containing protein 97 7e-21
Os10g0490533 93 1e-19
Os06g0117000 74 7e-14
>Os02g0637000 Barwin-related endoglucanase domain containing protein
Length = 192
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/192 (92%), Positives = 178/192 (92%)
Query: 1 MATTNCXXXXXXXXXXXXXXPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKA 60
MATTNC PGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKA
Sbjct: 1 MATTNCLLALAIAGLVLVSLPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKA 60
Query: 61 GRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANG 120
GRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANG
Sbjct: 61 GRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANG 120
Query: 121 RRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGE 180
RRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGE
Sbjct: 121 RRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGE 180
Query: 181 DVGEYDITWSDA 192
DVGEYDITWSDA
Sbjct: 181 DVGEYDITWSDA 192
>Os04g0364800 Barwin-related endoglucanase domain containing protein
Length = 183
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 148/193 (76%), Gaps = 11/193 (5%)
Query: 1 MATTNCXXXXXXXXXXXXXXPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKA 60
MA TNC PGLSRGD G CNPSG +R S +H CQDCCKA
Sbjct: 1 MAMTNCLLALAIAGVVLVSLPGLSRGD----------GECNPSGAIRSSTTHRCQDCCKA 50
Query: 61 GRSYPTYACSPATTGS-TKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYAN 119
G+SYPTY CSP TTGS T AVMTLNDF+AGGDGG PSECD +H NTE VVALSTGWYA
Sbjct: 51 GQSYPTYTCSPPTTGSSTDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAG 110
Query: 120 GRRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITG 179
G RC K++RINANGRSVLAKVVDECDS GCD+EHAYQPPCRPNVVDASQAVWDAL ITG
Sbjct: 111 GSRCGKSVRINANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITG 170
Query: 180 EDVGEYDITWSDA 192
EDVGEYDITWSDA
Sbjct: 171 EDVGEYDITWSDA 183
>Os10g0490666
Length = 216
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 104/161 (64%), Gaps = 15/161 (9%)
Query: 37 AGGCNPSGTLRPSRSHSCQDCCKAGRSYPTYACSPATTGS--TKAVMTLNDFEAGGDGGD 94
AG CN R+H DCC GR YP + CSP + + T A +TLN F GGDGG
Sbjct: 66 AGKCN--------RAHG-SDCCVTGRRYPQFRCSPPVSSARPTPATLTLNSFARGGDGGG 116
Query: 95 PSECDGKFHKNTERVVALSTGWYA--NGRRCNKNIRINA-NGRSVLAKVVDECDSLHGCD 151
S CDG+FH +T VVALS+GW RCN+ IR+ A NGRS LA+VVDECDS++GCD
Sbjct: 117 RSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRSALARVVDECDSVNGCD 176
Query: 152 KEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA 192
EH ++PPC +VVD S AVW AL + E VGE+ +TWSD
Sbjct: 177 AEHNFEPPCPNDVVDGSPAVWKALGLD-EGVGEFKVTWSDV 216
>Os10g0490100 Virulence factor, pectin lyase fold family protein
Length = 213
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 40 CNPSGTLRPS----RSHSCQDCCKAGRSYPTYACSPATTGS---TKAVMTLNDFEAGGDG 92
C PSG + + + + +CC+ G Y TYACSP T A++TLN F GGDG
Sbjct: 54 CQPSGAITGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALLTLNSFADGGDG 113
Query: 93 GDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINANG-RSVLAKVVDECDSLHGCD 151
G C G+F+ + + VVALSTGW+ RC K++ I A+G SV A VVDECDS GCD
Sbjct: 114 GGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCD 173
Query: 152 KEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA 192
+H ++PPCR N+VD S AVWDAL + +D GE ITWSDA
Sbjct: 174 SDHNFEPPCRNNIVDGSPAVWDALGLNKDD-GEAQITWSDA 213
>Os10g0489301
Length = 167
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 13/126 (10%)
Query: 70 SPATT-GSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIR 128
SPA + T AVMT+N FE G DGG P+ CDG++H + V ALSTGW+A GRRC++ IR
Sbjct: 52 SPAVSEDGTPAVMTVNGFEEGEDGGGPAACDGRYHSDRSLVAALSTGWFAGGRRCHRGIR 111
Query: 129 INA--NGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYD 186
I + NGRSV+A VVDECDS HG C+ ++VD S AVW AL + +VGE
Sbjct: 112 ITSRQNGRSVVATVVDECDSRHG---------GCKDDIVDTSAAVWSALGLD-TNVGEVP 161
Query: 187 ITWSDA 192
+TWSDA
Sbjct: 162 VTWSDA 167
>Os10g0489400
Length = 162
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 21/127 (16%)
Query: 75 GSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINAN-- 132
G AVMT+N FE G DGG P+ CDG +H + E +VALST W+A GRRC++ IRI +
Sbjct: 46 GGFPAVMTVNGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRITPSEH 105
Query: 133 --------GRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGE 184
R+V A VVDECDS G C+ +VVD+S AVW AL + D GE
Sbjct: 106 GRRGGGGGRRAVEATVVDECDSRRG----------CKDDVVDSSPAVWRALGLD-TDSGE 154
Query: 185 YDITWSD 191
+TWSD
Sbjct: 155 VRVTWSD 161
>Os10g0490400 Zinc finger, SWIM-type domain containing protein
Length = 1009
Score = 97.1 bits (240), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 122 RCNKNIRINANG---RSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRIT 178
RC +RI A+G RSV+AKVVDECDS+HGCD EH Y+PPC N+VDAS AVWDAL +
Sbjct: 3 RCGHRVRITASGGSGRSVVAKVVDECDSVHGCDGEHNYEPPCDNNIVDASPAVWDALGLD 62
Query: 179 GEDVGEYDITWSD 191
+ VG ITWSD
Sbjct: 63 -KSVGMEHITWSD 74
>Os10g0490533
Length = 186
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 11/125 (8%)
Query: 76 STKAVMTLNDFEAG-GDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKN-------- 126
+T A++TL F+ G DGG P+ CD +FH+NTE VVALS+GW G +
Sbjct: 53 TTPAILTLKVFDHGEDDGGVPTSCDMRFHRNTELVVALSSGWLRLGGGRRRCHRRIRVFA 112
Query: 127 IRINANGRS-VLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEY 185
+ A+GRS V+A+VVD+CDS++GC +E + PPCR N V S VW+ L + VGE+
Sbjct: 113 VAGAASGRSSVVARVVDDCDSVNGCREEDGFAPPCRNNAVGGSPVVWEKLGLNA-SVGEF 171
Query: 186 DITWS 190
++ WS
Sbjct: 172 EVVWS 176
>Os06g0117000
Length = 248
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 62/135 (45%), Gaps = 30/135 (22%)
Query: 56 DCCKAGRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVAL--S 113
DCC G+ YP + A G A+ TL+ F +N E VV L
Sbjct: 58 DCCVVGKRYPRFMWLTAGIGHAPAIPTLHMC---------------FRRNMELVVELYSG 102
Query: 114 TGWY--------ANGRRCNKNIRI-----NANGRSVLAKVVDECDSLHGCDKEHAYQPPC 160
+GW A RRCN IR+ NGRSV+ +VVDECD ++GC E + PPC
Sbjct: 103 SGWLCLDDGGGGARCRRCNGRIRVVVTAAAVNGRSVVVRVVDECDYVNGCCNEDGFAPPC 162
Query: 161 RPNVVDASQAVWDAL 175
+ NV S VW L
Sbjct: 163 QDNVGGESLTVWKKL 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,612,885
Number of extensions: 350551
Number of successful extensions: 921
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)