BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0610600 Os02g0610600|AK099572
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0610600 Similar to 9G8-like SR protein (RSZp22 splicin... 134 4e-32
Os02g0789400 Similar to 9G8-like SR protein (RSZp22 splicin... 120 5e-28
Os06g0187900 RNA-binding region RNP-1 (RNA recognition moti... 120 7e-28
>Os02g0610600 Similar to 9G8-like SR protein (RSZp22 splicing factor)
Length = 200
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 68/101 (67%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60
Query: 61 KNGWRVELSTKAXXXXXXXXXXXXXMKCYECGEPGHFAREC 101
KNGWRVELSTKA MKCYECGEPGHFAREC
Sbjct: 61 KNGWRVELSTKAGSGRGRDRSGGSDMKCYECGEPGHFAREC 101
>Os02g0789400 Similar to 9G8-like SR protein (RSZp22 splicing factor)
Length = 185
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 64/101 (63%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MAR+YVGNLDPRVT+ E+EDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60
Query: 61 KNGWRVELSTKAXXXXXXXXXXXXXMKCYECGEPGHFAREC 101
KNGWRVELS + MKCYECGE GHFAREC
Sbjct: 61 KNGWRVELSRNSSSRGGRDRHGGSEMKCYECGETGHFAREC 101
>Os06g0187900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 185
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MARVYVGNLDPRVTARE+EDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60
Query: 61 KNGWRVELSTKAXX-XXXXXXXXXXXMKCYECGEPGHFAREC 101
KNGWRVELS A KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSRNASSGRGGRDRYGSSESKCYECGETGHFAREC 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,997,420
Number of extensions: 57314
Number of successful extensions: 844
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)