BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0597800 Os02g0597800|AK072807
(585 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0597800 Steroid nuclear receptor, ligand-binding domai... 1020 0.0
Os04g0483200 Steroid nuclear receptor, ligand-binding domai... 797 0.0
Os04g0449500 Conserved hypothetical protein 328 6e-90
>Os02g0597800 Steroid nuclear receptor, ligand-binding domain containing protein
Length = 585
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/585 (87%), Positives = 510/585 (87%)
Query: 1 MEPPSGIRASAWSXXXXXXXXXXXXXXXXXXXXXXXPWAWLIMMIGISALVLGLWPMHVI 60
MEPPSGIRASAWS PWAWLIMMIGISALVLGLWPMHVI
Sbjct: 1 MEPPSGIRASAWSFFKFLPFFLGLLLLGIIKGALLFPWAWLIMMIGISALVLGLWPMHVI 60
Query: 61 WTYYCIIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPVMATFDAVG 120
WTYYCIIR FLAPVMATFDAVG
Sbjct: 61 WTYYCIIRSKLVGPVVKLLLLVAASVILVLWLIVGIVGSVLIGVVYGFLAPVMATFDAVG 120
Query: 121 EGKERPLYHCFVDGTWSTITGSCTVVRDLKDLLLHSYFSIMDDLRFHAPPGGEPYEIRVL 180
EGKERPLYHCFVDGTWSTITGSCTVVRDLKDLLLHSYFSIMDDLRFHAPPGGEPYEIRVL
Sbjct: 121 EGKERPLYHCFVDGTWSTITGSCTVVRDLKDLLLHSYFSIMDDLRFHAPPGGEPYEIRVL 180
Query: 181 DIPGALFAAACGFLVDGIMFTLIAFYKFPVMLFKGWKRLIEDLVGREGPFLETACVPFAG 240
DIPGALFAAACGFLVDGIMFTLIAFYKFPVMLFKGWKRLIEDLVGREGPFLETACVPFAG
Sbjct: 181 DIPGALFAAACGFLVDGIMFTLIAFYKFPVMLFKGWKRLIEDLVGREGPFLETACVPFAG 240
Query: 241 LAILLWPFAVFGAFLASIISSIPLGAFAAVVVYQESSLIMGLNYVISSVAIFDEYTNDVL 300
LAILLWPFAVFGAFLASIISSIPLGAFAAVVVYQESSLIMGLNYVISSVAIFDEYTNDVL
Sbjct: 241 LAILLWPFAVFGAFLASIISSIPLGAFAAVVVYQESSLIMGLNYVISSVAIFDEYTNDVL 300
Query: 301 DMAPGSCFPRFKYRKNEASTEGGSLSRPASFKDKQDGKKAPSRVTSFKGSFDEFNPFKLL 360
DMAPGSCFPRFKYRKNEASTEGGSLSRPASFKDKQDGKKAPSRVTSFKGSFDEFNPFKLL
Sbjct: 301 DMAPGSCFPRFKYRKNEASTEGGSLSRPASFKDKQDGKKAPSRVTSFKGSFDEFNPFKLL 360
Query: 361 DHLFEECKHRGEVLVAEGVITPKDIEETKSGKIGIGVLNVGLPAYVILHALIRSAKANSD 420
DHLFEECKHRGEVLVAEGVITPKDIEETKSGKIGIGVLNVGLPAYVILHALIRSAKANSD
Sbjct: 361 DHLFEECKHRGEVLVAEGVITPKDIEETKSGKIGIGVLNVGLPAYVILHALIRSAKANSD 420
Query: 421 GLILSDGSEITSDNRPKNTIFDWFFDPLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPKR 480
GLILSDGSEITSDNRPKNTIFDWFFDPLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPKR
Sbjct: 421 GLILSDGSEITSDNRPKNTIFDWFFDPLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPKR 480
Query: 481 LKEVVPHLPSSLNERKQAEIDALSRRLQGITRSISRYPTAKRRFDDLVRSLSEELERTXX 540
LKEVVPHLPSSLNERKQAEIDALSRRLQGITRSISRYPTAKRRFDDLVRSLSEELERT
Sbjct: 481 LKEVVPHLPSSLNERKQAEIDALSRRLQGITRSISRYPTAKRRFDDLVRSLSEELERTMG 540
Query: 541 XXXXXXXXXXXKLRSGISRMLSQRSMGKRTSNRGDDREAQLTIDP 585
KLRSGISRMLSQRSMGKRTSNRGDDREAQLTIDP
Sbjct: 541 GSQSGSVSQMQKLRSGISRMLSQRSMGKRTSNRGDDREAQLTIDP 585
>Os04g0483200 Steroid nuclear receptor, ligand-binding domain containing protein
Length = 588
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/583 (68%), Positives = 448/583 (76%), Gaps = 2/583 (0%)
Query: 1 MEPPSGIRASAWSXXXXXXXXXXXXXXXXXXXXXXXPWAWLIMMIGISALVLGLWPMHVI 60
MEPPSG AS S PWA LIM IG+SAL+LGLWPMHVI
Sbjct: 1 MEPPSGFWASLGSFLKFLPYFCGLLILGVIKGILICPWACLIMAIGLSALILGLWPMHVI 60
Query: 61 WTYYCIIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAPVMATFDAVG 120
WTYYCIIR FLAP+MATF AVG
Sbjct: 61 WTYYCIIRTKLVGPVVKLLLLIAATATLILWLIVGIPGSILAGLVYGFLAPIMATFGAVG 120
Query: 121 EGKERPLYHCFVDGTWSTITGSCTVVRDLKDLLLHSYFSIMDDLRFHAPPGGEPYEIRVL 180
+GKE+P HCFVDGTWSTITGSCT+VRD+KDLL HSYFSIMDDLR APP +PYEIR+L
Sbjct: 121 KGKEKPFVHCFVDGTWSTITGSCTIVRDVKDLLFHSYFSIMDDLRLQAPPDNKPYEIRLL 180
Query: 181 DIPGALFAAACGFLVDGIMFTLIAFYKFPVMLFKGWKRLIEDLVGREGPFLETACVPFAG 240
DIPGAL +AACG ++DGIMFTLIA YK PVMLFKGWKRLI+D++GREGPFLETACVPFAG
Sbjct: 181 DIPGALLSAACGLILDGIMFTLIAIYKCPVMLFKGWKRLIQDMIGREGPFLETACVPFAG 240
Query: 241 LAILLWPFAVFGAFLASIISSIPLGAFAAVVVYQESSLIMGLNYVISSVAIFDEYTNDVL 300
LAILLWPFAV GA LASI+SSIPLGAF AVV YQESSL MGL+YV+SSV+IFDEYTNDVL
Sbjct: 241 LAILLWPFAVVGAVLASILSSIPLGAFGAVVAYQESSLKMGLSYVVSSVSIFDEYTNDVL 300
Query: 301 DMAPGSCFPRFKYRKNEASTEGGSLSRPASF-KDKQDGKKAPSRVTSFKGSFDEFNPFKL 359
DMAPGSCFPR KYRK E S+ GGSLSRP SF K+KQ+GKK P+RVTSFK S ++FNPFKL
Sbjct: 301 DMAPGSCFPRLKYRKREDSSHGGSLSRPTSFNKEKQEGKKPPARVTSFKNSIEDFNPFKL 360
Query: 360 LDHLFEECKHRGEVLVAEGVITPKDIEETKSGKIGIGVLNVGLPAYVILHALIRSAKANS 419
L+HLF ECKH+GE LV EGVIT KDIEETKSGK+G GVLNVGLPAYVIL+AL+RSAKANS
Sbjct: 361 LEHLFVECKHQGETLVNEGVITMKDIEETKSGKVGTGVLNVGLPAYVILNALLRSAKANS 420
Query: 420 DGLILSDGSEITSDNRPKNTIFDWFFDPLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPK 479
GL+LSDGSEITSDNRPK+T+++WFFDPL+VIKEQIKA+NFTEEEE YLK RVLL P
Sbjct: 421 VGLLLSDGSEITSDNRPKHTLYEWFFDPLLVIKEQIKAENFTEEEEKYLKMRVLLIGGPD 480
Query: 480 RLKEVVPHLPSSLNERKQAEIDALSRRLQGITRSISRYPTAKRRFDDLVRSLSEELERTX 539
R+K +P +P SL+ERK+AEIDA +RRLQGIT+SISRYPTAKRRFD LV+ L ELERT
Sbjct: 481 RVKGSLPDVP-SLDERKKAEIDAFARRLQGITKSISRYPTAKRRFDILVKQLLSELERTV 539
Query: 540 XXXXXXXXXXXXKLRSGISRMLSQRSMGKRTSNRGDDREAQLT 582
LR GI+RMLSQ+SMGK + R +D EAQ+T
Sbjct: 540 GGGQSTNGSQSQSLRGGIARMLSQKSMGKAANVRDEDPEAQMT 582
>Os04g0449500 Conserved hypothetical protein
Length = 583
Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 276/510 (54%), Gaps = 29/510 (5%)
Query: 42 IMMIGISALVLGLWPMHVIWTYYCIIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
+M++G ++L L+P HV WT Y +I+
Sbjct: 53 LMVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKLAVLIALPVLFGLWLGLGIFGSAL 112
Query: 102 XXXXXXFLAPVMATFDAV-GEGKERPLYHCFVDGTWSTITGSCTVVRDLKDLLLHSYFSI 160
F P +ATF+A E + + H VDGTW TI GSCTVVRD DL HSY
Sbjct: 113 VALGYGFFTPWIATFEAFRQESESKKFVHGVVDGTWGTIKGSCTVVRDFADLCFHSYPVY 172
Query: 161 MDDLRFHAPPGGEPYEIRVLDIPGALFAAACGFLVDGIMFTLIAFYKFPVMLFKGWKRLI 220
+ +LR + EP+ IRVLD+P + G +VD ++T+IA K P MLFKGW+RL+
Sbjct: 173 LKELR-ESSQNCEPHSIRVLDVPSCIAVGLLGLIVDIPLYTVIALIKSPYMLFKGWQRLL 231
Query: 221 EDLVGREGPFLETACVPFAGLAILLWPFAVFGAFLASIISSIPLGAFAAVVVYQESSLIM 280
DL+ REGPFLET CVP AGLAIL WP V G+ L +I+SSI +G + AVVVYQE S
Sbjct: 232 HDLISREGPFLETVCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVVVYQEKSFQR 291
Query: 281 GLNYVISSVAIFDEYTNDVLDMAPGSCFPR-------------FKYRKNEASTEGGSLSR 327
G++YV++ VA FDEYTND L + G+ P+ F R N AS +GG
Sbjct: 292 GVSYVVAMVAEFDEYTNDWLYLREGTVLPKPSYRKRKSSSSTEFSVRTN-ASVKGGDQPS 350
Query: 328 PASFKDKQDGKKAPSRVTSFKGSFDEFNPFKLLDHLFEECKHRGEVLVAEGVITPKDIEE 387
AP+R S + + E ++ +++ + C+ RG L+ VIT D+ E
Sbjct: 351 SNEAPAMLVPTLAPAR--SVREAIQEVKMVQIWENMMKNCELRGRDLLNLNVITTVDLTE 408
Query: 388 -TKSGKIGIGVLNVGLPAYVILHALIRSAKANSDGLILSDGSEITSDNRPKNTIFDWFFD 446
++ + G + +G+P+Y +L ++ S KA S GL++ +G EI NRP++ + DWF
Sbjct: 409 WLRTKESGHEAIGLGVPSYSLLCMILHSIKAGSGGLLIGNGIEINQYNRPQDRLIDWFLH 468
Query: 447 PLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPKRLK-----EVVPHLPSSLNERKQAEID 501
P++V+K+QI+A TEEE +L+K L + +R +P P + +I
Sbjct: 469 PVLVLKDQIQALKMTEEEVRFLEKLTLFIGNSERANGWDNGAEIPQDPV-----RAGQIQ 523
Query: 502 ALSRRLQGITRSISRYPTAKRRFDDLVRSL 531
A+SRRL GI RS+S++PT +RR +++ L
Sbjct: 524 AISRRLVGIVRSMSKFPTYRRRHRHVMKLL 553
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,455,457
Number of extensions: 680238
Number of successful extensions: 1587
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1580
Number of HSP's successfully gapped: 5
Length of query: 585
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 479
Effective length of database: 11,501,117
Effective search space: 5509035043
Effective search space used: 5509035043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)