BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0595500 Os02g0595500|AK073096
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0595500 Similar to NAD-dependent isocitrate dehydrogen... 665 0.0
Os04g0479200 Similar to NAD-dependent isocitrate dehydrogen... 617 e-177
Os01g0276100 Similar to 3-isopropylmalate dehydrogenase, ch... 316 2e-86
Os03g0655700 Similar to 3-isopropylmalate dehydrogenase, ch... 103 3e-22
AK061346 102 4e-22
>Os02g0595500 Similar to NAD-dependent isocitrate dehydrogenase precursor (EC
1.1.1.41)
Length = 378
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/378 (87%), Positives = 331/378 (87%)
Query: 1 MARRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXRRTVTYMPRPGDGAPRAVTLIPGDGIG 60
MARRSA RRTVTYMPRPGDGAPRAVTLIPGDGIG
Sbjct: 1 MARRSAPLLQRLLSPTPSPSPSPPHPLAAAAVSRRTVTYMPRPGDGAPRAVTLIPGDGIG 60
Query: 61 PLVTGAVRQVMEAMHAPVYFESYEVRGDMPTVPPEVIDSIRRNKVCLKGGLATPVGGGVS 120
PLVTGAVRQVMEAMHAPVYFESYEVRGDMPTVPPEVIDSIRRNKVCLKGGLATPVGGGVS
Sbjct: 61 PLVTGAVRQVMEAMHAPVYFESYEVRGDMPTVPPEVIDSIRRNKVCLKGGLATPVGGGVS 120
Query: 121 SLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESL 180
SLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESL
Sbjct: 121 SLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESL 180
Query: 181 KVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIQYN 240
KVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIQYN
Sbjct: 181 KVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIQYN 240
Query: 241 EIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVXXXXXXXXXXXXXXXXXXXXQDHAVFEQG 300
EIIVDNCCMQLVAKPEQFDVMVTPNLYGNLV QDHAVFEQG
Sbjct: 241 EIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGQDHAVFEQG 300
Query: 301 ASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDL 360
ASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDL
Sbjct: 301 ASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDL 360
Query: 361 GGSSTTQEVTDAVIAHLD 378
GGSSTTQEVTDAVIAHLD
Sbjct: 361 GGSSTTQEVTDAVIAHLD 378
>Os04g0479200 Similar to NAD-dependent isocitrate dehydrogenase precursor (EC
1.1.1.41)
Length = 339
Score = 617 bits (1591), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/339 (88%), Positives = 311/339 (91%)
Query: 40 MPRPGDGAPRAVTLIPGDGIGPLVTGAVRQVMEAMHAPVYFESYEVRGDMPTVPPEVIDS 99
MPRPGDG PRAVTLIPGDGIGPLVTGAV+QVME MHAPVYFE+YEVRGDMPTVPP VI+S
Sbjct: 1 MPRPGDGNPRAVTLIPGDGIGPLVTGAVQQVMEVMHAPVYFETYEVRGDMPTVPPAVIES 60
Query: 100 IRRNKVCLKGGLATPVGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRE 159
IRRNKVCLKGGLATPVGGGVSSLN+QLRKELDLYASLVNC N PGLPTRH +VDIVVIRE
Sbjct: 61 IRRNKVCLKGGLATPVGGGVSSLNMQLRKELDLYASLVNCSNFPGLPTRHQDVDIVVIRE 120
Query: 160 NTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLA 219
NTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLA
Sbjct: 121 NTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLA 180
Query: 220 DGLFLESCREVATKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVXXXXXXXX 279
DGLFLESCREVA+KYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLV
Sbjct: 181 DGLFLESCREVASKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIA 240
Query: 280 XXXXXXXXXXXXQDHAVFEQGASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFA 339
QDHAVFEQGASAGNVGN ++EQKKANP+ALLLSSAMMLRHLQFPSFA
Sbjct: 241 GGTGVMPGGNVGQDHAVFEQGASAGNVGNENILEQKKANPIALLLSSAMMLRHLQFPSFA 300
Query: 340 DRLETAVKRVIAEGKYRTKDLGGSSTTQEVTDAVIAHLD 378
DRLETAVKRVIAEGKYRTKDLGG+STTQEVTDAVIA+LD
Sbjct: 301 DRLETAVKRVIAEGKYRTKDLGGTSTTQEVTDAVIANLD 339
>Os01g0276100 Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor
(EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Length = 362
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/331 (49%), Positives = 218/331 (65%), Gaps = 8/331 (2%)
Query: 52 TLIPGDGIGPLVTGAVRQVMEAMHAPVYFESYEVRGDM-----PTVPPEVIDSIRRNKVC 106
TL PGDGIGP + +V+QV P+ +E + V ++ + E ++S+RRNKV
Sbjct: 35 TLFPGDGIGPEIAESVKQVFNVAGVPIEWEEHYVGTEVDPRTESFLTWESLESVRRNKVG 94
Query: 107 LKGGLATPVGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYS 166
LKG +ATP+G G SLN+ LRKEL LYA++ C +LPG TR+D+V++V IRENTEGEYS
Sbjct: 95 LKGPMATPIGKGHRSLNLTLRKELGLYANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYS 154
Query: 167 GLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLES 226
GLEH+VV GVVESLK+IT+ S R+A+YAF YA N R++V+A+HKANIM+ DGLFL+
Sbjct: 155 GLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKC 214
Query: 227 CREVATKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVXXXXXXXXXXXXXXX 286
CREVA KYP I Y E+I+DNCCM LV P FDV+V PNLYG+++
Sbjct: 215 CREVAEKYPEIVYEEVIIDNCCMTLVKNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTP 274
Query: 287 XXXXXQDHAVFEQGASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 346
+ A A + + + ANP AL+LS+ MMLRHLQF + ADR+ A+
Sbjct: 275 SCNIGEGGICL---AEAVHGSAPDIAGKNLANPTALMLSAVMMLRHLQFNNQADRIHNAI 331
Query: 347 KRVIAEGKYRTKDLGGSSTTQEVTDAVIAHL 377
+ I+EGK+RT DLGG ++T + T AV H+
Sbjct: 332 LQTISEGKFRTADLGGKASTSDFTKAVCDHI 362
>Os03g0655700 Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor
(EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Length = 389
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 164/357 (45%), Gaps = 60/357 (16%)
Query: 51 VTLIPGDGIGPLVTGAVRQVM--------------EAMHAPVYFESYEVRGDMPTVPPEV 96
VTL+PGDGIGP V + V+ E + ++Y V +P E
Sbjct: 27 VTLLPGDGIGPEVVAVAKDVLSLAGALEGVEFRFQEKLMGGAAVDAYGV-----PLPEET 81
Query: 97 IDSIRRNKVCLKGGLATPVGGGVSSLN-----------VQLRKELDLYASLVNCFNLPGL 145
+ + + + L G + GG N +Q+R L ++A+L LP L
Sbjct: 82 LAAAQASDAVLLGAI-----GGYKWDNNEKHLKPETGLLQIRAGLGVFANLRPAAVLPQL 136
Query: 146 PTRH-------DNVDIVVIRENTEGEYSGL-----EHEVVPGVVESLKVITKFCSERIAK 193
+ VDI+V+RE T G Y G +++ + +V + +RI +
Sbjct: 137 VDASTLKKEVAEGVDIMVVRELTGGIYFGQPRGFGKNDKGEDTGFNTEVYSASEIDRITR 196
Query: 194 YAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIQYNEIIVDNCCMQLVA 253
AFE A R K+ +V KAN+++ A L+ + +A+++P I+ + + VDN MQL+
Sbjct: 197 VAFEVAR-KRRGKLCSVDKANVLE-ASMLWRKRVTSLASEFPDIELSHMYVDNAAMQLIR 254
Query: 254 KPEQFDVMVTPNLYGNLVXXXXXXXXXXXXXXXXXXXXQDH-AVFE--QGASAGNVGNVK 310
P+QFD +VT N++G+++ + +FE G++ G
Sbjct: 255 NPKQFDTIVTNNIFGDILSDEASMLTGSIGMLPSASVGESGPGLFEPIHGSAPDIAG--- 311
Query: 311 VVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVIAEGKYRTKDLGGSSTT 366
Q KANP+A +LS+AM+LR+ L + A R+E AV + G +RT D+ TT
Sbjct: 312 ---QDKANPLATILSAAMLLRYGLGEENAAKRVEAAVTETLNNG-FRTGDIYSPGTT 364
>AK061346
Length = 364
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 168/360 (46%), Gaps = 44/360 (12%)
Query: 51 VTLIPGDGIGPLVTGAVRQVMEAMHA----PVYFE-------SYEVRGDMPTVPPEVIDS 99
+ L+PGDGIGP V +V+EA+ A FE SY+V +P E ID
Sbjct: 9 IALLPGDGIGPEVCAEAVKVLEAVGALRGHTFAFERALCGGASYDVH--QSHLPQETIDI 66
Query: 100 IRRNKVCLKGGLATPVGG--------GVSSLNVQLRKELDLYASL--VNCFN-LPGL-PT 147
+ R+ L G + P + + LRK L ++ ++ LP L P
Sbjct: 67 VARSDAVLFGSVGGPPDAQEDPKWKDAEKNCLLGLRKNFGLAVNIRPAKIYSMLPDLSPL 126
Query: 148 R----HDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNN 203
+ VD+V++RE G Y G EH V + T+ + ++AFE A ++
Sbjct: 127 KPSLIASGVDMVIVRELISGIYFG-EHATNGDVATDVMRYTEAEIKIPMRFAFETA-MSR 184
Query: 204 RKKVTAVHKANIMKLADGLFLESCREVATKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVT 263
KK+T V KAN++ + L+ + +E+ ++P + + +DN MQ++ KP FDV+ T
Sbjct: 185 TKKLTVVDKANVLDCSR-LWRKVAKEMHAEFPQVALEFMYIDNAVMQIIQKPSHFDVIAT 243
Query: 264 PNLYGNLVXXXXXXXXXXXXXXXXXXXXQDHAVFEQ-GASAGNVGNVKVVEQKKANPVAL 322
N++G+++ +FE G SA ++ V ANP+A
Sbjct: 244 GNMFGDILSDAASVLPGSLGLMPSASLGDKIHLFEPIGGSAPDIAGKGV-----ANPIAQ 298
Query: 323 LLSSAMMLRH-LQFPSFADRLETAVKRVIAEGKYRTKDL----GGSSTTQEVTDAVIAHL 377
+LS+A++LR+ + A +E AV+ V+ +G RT DL + T + DA++A +
Sbjct: 299 ILSAALLLRYSFALEAEAQLIEKAVEDVLQDG-LRTGDLTHDRASAVGTAAMGDAIVAKI 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,202,789
Number of extensions: 450632
Number of successful extensions: 865
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 5
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)