Os01g0276100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH).
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Os01g0276100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.35 | 0.241 | 11.8 | -0.601 | 0.47 | 0.371 | 0.0254 | 0.852 | -0.329 | 2.68 | 0.6805 | 4530 | -- | -- |
| 26.54 | 0.24 | 11.8 | -0.628 | 0.455 | 0.384 | -0.0193 | -- | -0.344 | 2.69 | 1.409 | 5765 | -- | -- |
| 25.71 | 0.236 | 11.8 | -0.622 | 0.466 | 0.21 | -- | 0.909 | -0.312 | 2.55 | 2.296 | 16540 | -- | -- |
| 26.52 | 0.24 | 11.8 | -0.633 | 0.46 | 0.379 | -- | -- | -0.342 | 2.66 | 1.507 | 5765 | -- | -- |
| 37.62 | 0.286 | 11.8 | -0.589 | -- | 0.248 | -- | 0.956 | -0.31 | -- | 5.81 | 17022 | -- | -- |
| 29.55 | 0.255 | 11.8 | -0.721 | 0.466 | -- | -0.0435 | -- | -0.294 | 2.69 | -- | -- | -- | -- |
| 29.56 | 0.255 | 11.8 | -0.72 | 0.466 | -- | -- | -- | -0.294 | 2.67 | -- | -- | -- | -- |
| 38.9 | 0.29 | 11.8 | -0.62 | -- | 0.389 | -- | -- | -0.339 | -- | 1 | 5860 | -- | -- |
| 35.61 | 0.278 | 11.8 | -- | 0.464 | 0.676 | -- | -- | -0.294 | 2.61 | 1.569 | 2380 | -- | -- |
| 42.2 | 0.304 | 11.8 | -0.701 | -- | -- | -- | -- | -0.282 | -- | -- | -- | -- | -- |
| 43.24 | 0.308 | 11.8 | -- | 0.452 | -- | -- | -- | -0.213 | 2.65 | -- | -- | -- | -- |
| 48.16 | 0.323 | 11.8 | -- | -- | 0.618 | -- | -- | -0.269 | -- | 5.187 | 2652 | -- | -- |
| 55.15 | 0.347 | 11.8 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.90 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 6 | 24.38 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 7 | 24.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 11 | 24.55 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 19 | 24.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 25 | 24.67 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 26 | 24.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 29 | 24.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 24.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 31 | 24.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 47 | 24.79 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 57 | 24.82 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 63 | 24.83 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 68 | 24.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 76 | 24.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 84 | 24.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 94 | 24.89 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 124 | 24.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 152 | 24.98 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 172 | 25.00 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 178 | 25.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 193 | 25.03 | humidity | 80 | 14400 | > th | dose independent | sin | 23 | NA |
| 201 | 25.04 | humidity | 80 | 14400 | < th | dose independent | sin | 23 | NA |
| 219 | 25.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 256 | 25.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 262 | 25.09 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 266 | 25.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 294 | 25.10 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 326 | 25.12 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 334 | 25.12 | humidity | 70 | 14400 | > th | dose dependent | sin | 23 | NA |
| 335 | 25.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 336 | 25.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 387 | 25.15 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 399 | 25.15 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 494 | 25.18 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 513 | 25.19 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 560 | 25.21 | wind | 3 | 43200 | < th | dose dependent | sin | 5 | NA |
| 690 | 25.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 942 | 25.33 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 963 | 25.34 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 974 | 25.34 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 18 |