BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0276100 Os01g0276100|AK059596
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0276100 Similar to 3-isopropylmalate dehydrogenase, ch... 749 0.0
Os02g0595500 Similar to NAD-dependent isocitrate dehydrogen... 343 8e-95
Os04g0479200 Similar to NAD-dependent isocitrate dehydrogen... 343 2e-94
Os03g0655700 Similar to 3-isopropylmalate dehydrogenase, ch... 167 9e-42
AK061346 149 4e-36
>Os01g0276100 Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor
(EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Length = 362
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MALRRLLQGSVLPRMAGRAAAAPFSTASGETVRATLFPGDGIGPEIAESVKQVFNVAGVP 60
MALRRLLQGSVLPRMAGRAAAAPFSTASGETVRATLFPGDGIGPEIAESVKQVFNVAGVP
Sbjct: 1 MALRRLLQGSVLPRMAGRAAAAPFSTASGETVRATLFPGDGIGPEIAESVKQVFNVAGVP 60
Query: 61 IEWEEHYVGTEVDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGL 120
IEWEEHYVGTEVDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGL
Sbjct: 61 IEWEEHYVGTEVDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGL 120
Query: 121 YANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVA 180
YANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVA
Sbjct: 121 YANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVA 180
Query: 181 EYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMTLV 240
EYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMTLV
Sbjct: 181 EYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMTLV 240
Query: 241 KNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGICLAEAVHGSAPDIAGKN 300
KNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGICLAEAVHGSAPDIAGKN
Sbjct: 241 KNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGICLAEAVHGSAPDIAGKN 300
Query: 301 LANPTALMLSAVMMLRHLQFNNQADRIHNAILQTISEGKFRTADLGGKASTSDFTKAVCD 360
LANPTALMLSAVMMLRHLQFNNQADRIHNAILQTISEGKFRTADLGGKASTSDFTKAVCD
Sbjct: 301 LANPTALMLSAVMMLRHLQFNNQADRIHNAILQTISEGKFRTADLGGKASTSDFTKAVCD 360
Query: 361 HI 362
HI
Sbjct: 361 HI 362
>Os02g0595500 Similar to NAD-dependent isocitrate dehydrogenase precursor (EC
1.1.1.41)
Length = 378
Score = 343 bits (881), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 171/331 (51%), Positives = 231/331 (69%), Gaps = 8/331 (2%)
Query: 35 TLFPGDGIGPEIAESVKQVFNVAGVPIEWEEHYVGTEVDPRTESFLTWESLESVRRNKVG 94
TL PGDGIGP + +V+QV P+ +E + V ++ + E ++S+RRNKV
Sbjct: 52 TLIPGDGIGPLVTGAVRQVMEAMHAPVYFESYEVRGDM-----PTVPPEVIDSIRRNKVC 106
Query: 95 LKGPMATPIGKGHRSLNLTLRKELGLYANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYS 154
LKG +ATP+G G SLN+ LRKEL LYA++ C +LPG TR+D+V++V IRENTEGEYS
Sbjct: 107 LKGGLATPVGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYS 166
Query: 155 GLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKC 214
GLEH+VV GVVESLK+IT+ S R+A+YAF YA N R++V+A+HKANIM+ DGLFL+
Sbjct: 167 GLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLES 226
Query: 215 CREVAEKYPEIVYEEVIIDNCCMTLVKNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTP 274
CREVA KYP I Y E+I+DNCCM LV P FDV+V PNLYG+++++ AG+ GG G+ P
Sbjct: 227 CREVATKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMP 286
Query: 275 SCNIGEGGICL---AEAVHGSAPDIAGKNLANPTALMLSAVMMLRHLQFNNQADRIHNAI 331
N+G+ A A + + + ANP AL+LS+ MMLRHLQF + ADR+ A+
Sbjct: 287 GGNVGQDHAVFEQGASAGNVGNVKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 346
Query: 332 LQTISEGKFRTADLGGKASTSDFTKAVCDHI 362
+ I+EGK+RT DLGG ++T + T AV H+
Sbjct: 347 KRVIAEGKYRTKDLGGSSTTQEVTDAVIAHL 377
>Os04g0479200 Similar to NAD-dependent isocitrate dehydrogenase precursor (EC
1.1.1.41)
Length = 339
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/333 (51%), Positives = 233/333 (69%), Gaps = 12/333 (3%)
Query: 35 TLFPGDGIGPEIAESVKQVFNVAGVPIEWEEHYVGTEVDPRTESFLTWESLESVRRNKVG 94
TL PGDGIGP + +V+QV V P+ +E + V ++ + + ES+RRNKV
Sbjct: 13 TLIPGDGIGPLVTGAVQQVMEVMHAPVYFETYEVRGDMPTVPPAVI-----ESIRRNKVC 67
Query: 95 LKGPMATPIGKGHRSLNLTLRKELGLYANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYS 154
LKG +ATP+G G SLN+ LRKEL LYA++ C++ PG TR+ DV++V IRENTEGEYS
Sbjct: 68 LKGGLATPVGGGVSSLNMQLRKELDLYASLVNCSNFPGLPTRHQDVDIVVIRENTEGEYS 127
Query: 155 GLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKC 214
GLEH+VV GVVESLK+IT+ S R+A+YAF YA N R++V+A+HKANIM+ DGLFL+
Sbjct: 128 GLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLES 187
Query: 215 CREVAEKYPEIVYEEVIIDNCCMTLVKNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTP 274
CREVA KYP I Y E+I+DNCCM LV P FDV+V PNLYG+++++ AG+ GG G+ P
Sbjct: 188 CREVASKYPGIQYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMP 247
Query: 275 SCNIGEGGICLAEAVHGSAPDIAGKNL-----ANPTALMLSAVMMLRHLQFNNQADRIHN 329
N+G+ + SA ++ +N+ ANP AL+LS+ MMLRHLQF + ADR+
Sbjct: 248 GGNVGQDHAVFEQG--ASAGNVGNENILEQKKANPIALLLSSAMMLRHLQFPSFADRLET 305
Query: 330 AILQTISEGKFRTADLGGKASTSDFTKAVCDHI 362
A+ + I+EGK+RT DLGG ++T + T AV ++
Sbjct: 306 AVKRVIAEGKYRTKDLGGTSTTQEVTDAVIANL 338
>Os03g0655700 Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor
(EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Length = 389
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 44/371 (11%)
Query: 13 PRMAGRAAAAPFSTASGETVRATLFPGDGIGPEIAESVKQVFNVAG----VPIEWEEHYV 68
P A R AA +A+ + TL PGDGIGPE+ K V ++AG V ++E +
Sbjct: 6 PATARRPMAAVRCSAAKRSYNVTLLPGDGIGPEVVAVAKDVLSLAGALEGVEFRFQEKLM 65
Query: 69 GTEVDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN-----------LTLRKE 117
G L E+L + + + L G + G++ N L +R
Sbjct: 66 GGAAVDAYGVPLPEETLAAAQASDAVLLGAIG-----GYKWDNNEKHLKPETGLLQIRAG 120
Query: 118 LGLYANVRPCNSLPGY-------KTRYDDVNLVTIRENTEGEYSGLEHQVVRGVVESLK- 169
LG++AN+RP LP K + V+++ +RE T G Y G RG ++ K
Sbjct: 121 LGVFANLRPAAVLPQLVDASTLKKEVAEGVDIMVVRELTGGIYFGQP----RGFGKNDKG 176
Query: 170 --------IITRQASLRVAEYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKCCREVAEK 221
+ + R+ AF A+ R ++ ++ KAN++ + L+ K +A +
Sbjct: 177 EDTGFNTEVYSASEIDRITRVAFEVARKR-RGKLCSVDKANVLEAS-MLWRKRVTSLASE 234
Query: 222 YPEIVYEEVIIDNCCMTLVKNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG 281
+P+I + +DN M L++NP FD +V N++GDI+SD + L G +G+ PS ++GE
Sbjct: 235 FPDIELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMLTGSIGMLPSASVGES 294
Query: 282 GICLAEAVHGSAPDIAGKNLANPTALMLSAVMMLRH-LQFNNQADRIHNAILQTISEGKF 340
G L E +HGSAPDIAG++ ANP A +LSA M+LR+ L N A R+ A+ +T++ G F
Sbjct: 295 GPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLRYGLGEENAAKRVEAAVTETLNNG-F 353
Query: 341 RTADLGGKAST 351
RT D+ +T
Sbjct: 354 RTGDIYSPGTT 364
>AK061346
Length = 364
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 182/355 (51%), Gaps = 28/355 (7%)
Query: 30 ETVRATLFPGDGIGPEI-AESVKQVFNVA---GVPIEWEEHYVGTEVDPRTESFLTWESL 85
+T + L PGDGIGPE+ AE+VK + V G +E G +S L E++
Sbjct: 5 KTHKIALLPGDGIGPEVCAEAVKVLEAVGALRGHTFAFERALCGGASYDVHQSHLPQETI 64
Query: 86 ESVRRNKVGLKGPMATP--------IGKGHRSLNLTLRKELGLYANVRPC---NSLPGYK 134
+ V R+ L G + P ++ L LRK GL N+RP + LP
Sbjct: 65 DIVARSDAVLFGSVGGPPDAQEDPKWKDAEKNCLLGLRKNFGLAVNIRPAKIYSMLPDLS 124
Query: 135 TRYDD-----VNLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVA-EYAFHYAK 188
V++V +RE G Y G EH G V + + +A +++ +AF A
Sbjct: 125 PLKPSLIASGVDMVIVRELISGIYFG-EH-ATNGDVATDVMRYTEAEIKIPMRFAFETAM 182
Query: 189 TNGRERVSAIHKANIMRKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMTLVKNPGLFDV 248
+ + +++ + KAN++ L+ K +E+ ++P++ E + IDN M +++ P FDV
Sbjct: 183 SRTK-KLTVVDKANVL-DCSRLWRKVAKEMHAEFPQVALEFMYIDNAVMQIIQKPSHFDV 240
Query: 249 LVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGICLAEAVHGSAPDIAGKNLANPTALM 308
+ N++GDI+SD + L G LGL PS ++G+ I L E + GSAPDIAGK +ANP A +
Sbjct: 241 IATGNMFGDILSDAASVLPGSLGLMPSASLGD-KIHLFEPIGGSAPDIAGKGVANPIAQI 299
Query: 309 LSAVMMLRH-LQFNNQADRIHNAILQTISEGKFRTADLGGKASTSDFTKAVCDHI 362
LSA ++LR+ +A I A+ + +G RT DL +++ T A+ D I
Sbjct: 300 LSAALLLRYSFALEAEAQLIEKAVEDVLQDG-LRTGDLTHDRASAVGTAAMGDAI 353
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,121,319
Number of extensions: 502933
Number of successful extensions: 1142
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 5
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)